9c0f463152095051a207201ce8d28eec87a1aaaa hiram Tue Dec 6 13:39:52 2016 -0800 per Jim request, adding copyright information to a couple README files refs #13978 diff --git src/browserbox/README.txt src/browserbox/README.txt index ddf3bcc..4f3ba9d 100644 --- src/browserbox/README.txt +++ src/browserbox/README.txt @@ -1,37 +1,52 @@ +LICENSE + +The Genome Browser binaries and source code are freely available for +academic, nonprofit, and personal use. A license is required for +commercial download and installation of most Genome Browser binaries +and source code, with the exception of specific items in some directories +that are freely available for all uses. Please note the current +license infomation with the list of specific directory permissions: + + http://genome.ucsc.edu/license/ + +============================================================================= + + kent/browserbox/ + This directory contains the config files that are needed for the Genome Browser in a box. It should be possible to convert a Ubuntu 14 installation into a Genome Browser in a box by copying all these files into the root directory as sudo. (Redmine #11957) See also the main gbib doc page: http://genomewiki.ucsc.edu/genecats/index.php/Genome_Browser_in_a_Box_config The following symlinks are not in git and have to be set manually : usr/local/apache/htdocs/folders -> /media usr/local/apache/trash -> /data/trash/ usr/local/apache/userdata -> /data/userdata/ var/lib/mysql -> /data/mysql Change ownerships of /data/gbdb, /data/trash and /data/userdata to www-data and /data/mysql to mysql This tree does not include the trash cleaner binaries as they are > 5MB. Ask Hiram to install the trash cleaner if you need it fixed or changed. The directory clientInstall/ contains two small scripts that add the entry "genome.ucsc.local" to the local hosts file. One is written in VisualBasic for Windows, the other is in AppleScript for OSX. The AppleScript version also contains a firewall rule that redirects localhost:1234 to localhost:80, the only way to get a restricted port (<1024) to work with VirtualBox. (Redmine #12834) The Applescript can be packaged into an app with the AppleScript editor. The result can only be copied around as a zip file due to OSX special file attributes. the files packages-ubuntu*.txt are the lists of packages installed on the final gbib in ubuntu13 and ubuntu14. Various changes of the box are documented in root/changes.txt The red box clipart is from http://www.clker.com/clipart-14656.html