Commits for max

v342_base to v343_preview (2016-12-05 to 2016-12-19) v343

c6d2a00e29c9874544eca28b9b5c25deb08e694d Mon Dec 5 12:05:32 2016 -0800

• adding r-base-core to gbic script, email from cmalee
  • src/product/installer/browserSetup.sh - lines changed 4, context: html, text, full: html, text

752a606718a481777bc8d503fc2a69a64a754063 Wed Dec 7 14:44:01 2016 -0800

• increasing maximum extra bigBed fields number to 1024 fields. One of my bigBed files mysteriously failed. no redmine.
  • src/hg/hgTracks/bigBedTrack.c - lines changed 1, context: html, text, full: html, text

29b62babe31abb529c19a265923eafc873c10616 Thu Dec 8 12:12:57 2016 -0800

• fixing an unnecessary NULL bug in hubCheck found by braney
  • src/hg/utils/hubCheck/hubCheck.c - lines changed 3, context: html, text, full: html, text

1d7247f0e72ce7c7ee1543bb31e6e71b4f2d771d Fri Dec 9 16:15:13 2016 -0800

• trying to fix an error that is thrown only in newer mysql versions. The fields in hubStatus are defined as not being NULL but have NULL as their default value. In addition, in the INSERT statement in hubConnect.c, they are not specified. Newer Mysql versions refuse to set them to NULL if NULL is not allowed. No redmine. This came up on the CIRM server but will come up everywhere in the future.
  • src/hg/lib/hubConnect.c - lines changed 2, context: html, text, full: html, text

6637c305d27006f311f212614841153ce4aadc98 Mon Dec 12 17:15:27 2016 -0800

• allow a DNA sequence in the position box, refs# 16950
  • src/hg/js/hgTracks.js - lines changed 10, context: html, text, full: html, text

b4b68f5f9cd0ce68dd8c94c4fc8a1ca0dbbcfe10 Mon Dec 12 17:18:01 2016 -0800

• changing autocomplete box text for DNA sequence quick jump, refs #16950
  • src/hg/js/autocomplete.js - lines changed 2, context: html, text, full: html, text

6d01ac5f9d5e585990537e6146beb591a9170436 Tue Dec 13 14:35:56 2016 -0800

• backing out the documentation of the quick BLAT on the position box again. May lead to more trouble than it's worth for now, refs #16950
  • src/hg/js/autocomplete.js - lines changed 2, context: html, text, full: html, text
  • src/hg/js/hgTracks.js - lines changed 7, context: html, text, full: html, text
  • src/hg/lib/hdb.c - lines changed 2, context: html, text, full: html, text

a803fd1b4604a2a90f26f92a2eecd77677c7e7f2 Tue Dec 13 14:55:21 2016 -0800

• fixing a buffer overflow that appears when one is pasting a long text into the positionbox. This has come up before but I cannot find the redmine now.
  • src/hg/lib/hdb.c - lines changed 3, context: html, text, full: html, text

c9cff716524000d6b44e520bbfe0026685fdbbb0 Thu Dec 15 14:35:38 2016 -0800

• making the gbic mirrors identify itself to phoneHome with a distinct string, refs #14399
  • src/hg/inc/hdb.h - lines changed 3, context: html, text, full: html, text
  • src/hg/lib/hdb.c - lines changed 6, context: html, text, full: html, text
  • src/product/installer/browserSetup.sh - lines changed 4, context: html, text, full: html, text

09a173fa38faa9e18e03adef7cd98e2489e1d191 Thu Dec 15 14:57:15 2016 -0800

• adding mm9, refs #17235
  • src/hg/makeDb/doc/mm9.txt - lines changed 4, context: html, text, full: html, text

199db02e8d247ce16b1384100b5058a7e10e0cf2 Fri Dec 16 10:58:42 2016 -0800

• fixing a bug in gbic found in the source code by Chris L, refs #18553
  • src/product/installer/browserSetup.sh - lines changed 3, context: html, text, full: html, text

d3cb61d5bd1304565bab0443c8b73269c7e95ee7 Fri Dec 16 12:07:33 2016 -0800

• fixing a bugfix for a bug in gbic found in the source code by Chris L. (What would I do without ChrisL?) refs #18553
  • src/product/installer/browserSetup.sh - lines changed 1, context: html, text, full: html, text

72085932f3a35662f7445168802b13d86a25c343 Fri Dec 16 16:25:06 2016 -0800

• update to GBIC mirror docs. This commit was approved by Chris L.
  • src/product/installer/README.md - lines changed 6, context: html, text, full: html, text
  • src/product/mirrorDocs/staticPage.lua - lines changed 1, context: html, text, full: html, text