Commits for braney

v343_preview to v343_preview2 (2016-12-19 to 2017-01-03) v343

90f26ce1f4bd4f69b53d11569d4c4efc0c3386b7 Tue Dec 20 12:41:19 2016 -0800

• make some utilities to turn mafs into bigMafs
  • src/hg/utils/bigMafToMaf/bigMafToMaf.c - lines changed 64, context: html, text, full: html, text
  • src/hg/utils/bigMafToMaf/makefile - lines changed 3, context: html, text, full: html, text
  • src/hg/utils/mafToBigMaf/mafToBigMaf.c - lines changed 82, context: html, text, full: html, text
  • src/hg/utils/mafToBigMaf/makefile - lines changed 3, context: html, text, full: html, text
  • src/hg/utils/mafToBigMaf/tests/input/chrom.sizes - lines changed 455, context: html, text, full: html, text
  • src/hg/utils/mafToBigMaf/tests/input/test1.maf - lines changed 2351, context: html, text, full: html, text
  • src/hg/utils/mafToBigMaf/tests/makefile - lines changed 23, context: html, text, full: html, text
  • src/hg/utils/makefile - lines changed 1, context: html, text, full: html, text
  • src/inc/maf.h - lines changed 3, context: html, text, full: html, text
  • src/lib/maf.c - lines changed 17, context: html, text, full: html, text

8b5faf8487826c2d273b3f22b500a3ef0c94d8bf Tue Dec 20 13:39:36 2016 -0800

• a few more tweaks to get bigMafToMaf into the utils
  • src/hg/utils/bigMafToMaf/bigMafToMaf.c - lines changed 4, context: html, text, full: html, text
  • src/hg/utils/makefile - lines changed 1, context: html, text, full: html, text

c4085691bbf14edaf06118a0bdb6f1addda9f72a Tue Dec 20 13:40:18 2016 -0800

• keep the hubCheck test silent
  • src/hg/utils/hubCheck/tests/makefile - lines changed 1, context: html, text, full: html, text

f9967d6f83a3366bbd70007ca157d592aa5bb0c3 Tue Dec 20 13:58:56 2016 -0800

• fix up bigMaf documentation to use new mafToBigMaf utility
  • src/hg/htdocs/goldenPath/help/bigMaf.html - lines changed 5, context: html, text, full: html, text

288c75cfcfc1f8d73bbb1ec41477695ed7f7ad6d Thu Dec 22 11:01:18 2016 -0800

• more tweaks to the bigMaf instructions
  • src/hg/htdocs/goldenPath/help/bigMaf.html - lines changed 6, context: html, text, full: html, text

64b59a1531511c86e7fc369bc9f76ceaf14f8dd5 Fri Dec 23 14:03:07 2016 -0800

• fix a problem with hgc and tagStorm db's
  • src/hg/lib/hui.c - lines changed 2, context: html, text, full: html, text