314b81670d2d1446d4da81108ac0ce2a72fc569d
markd
  Fri Jan 6 15:32:57 2017 -0800
bigTransMap hgc working

diff --git src/hg/hgTracks/transMapTracks.c src/hg/hgTracks/transMapTracks.c
index 5146263..386514e 100644
--- src/hg/hgTracks/transMapTracks.c
+++ src/hg/hgTracks/transMapTracks.c
@@ -77,31 +77,31 @@
 struct transMapGene *gene = NULL;
 boolean srcDbExists = FALSE;
 if (labelSet & (useOrgCommon|useOrgAbbrv|useOrgDb|useGene))
     {
     info = transMapInfoQuery(conn, transMapInfoTbl, lf->name);
     srcDbExists = sqlDatabaseExists(info->srcDb);
     }
 if ((labelSet & useGene) && (geneConn != NULL))
     {
     gene = transMapGeneQuery(geneConn, transMapGeneTbl,
                              info->srcDb, transMapIdToSeqId(info->srcId));
     }
 
 struct dyString *label = dyStringNew(64);
 if (labelSet & useOrgAbbrv && srcDbExists)
-    addToLabel(label, orgShortForDb(info->srcDb));
+    addToLabel(label, hOrgShortForDb(info->srcDb));
 if (labelSet & useOrgCommon && srcDbExists)
     addToLabel(label, hOrganism(info->srcDb));
 if (labelSet & useOrgDb)
     addToLabel(label, info->srcDb);
 if (labelSet & useGene) 
     {
     if ((gene != NULL) && (strlen(gene->geneName) > 0))
         addToLabel(label, gene->geneName);
     else
         labelSet |= useAcc;  // no gene, so force acc
     }
 if (labelSet & useAcc)
     addToLabel(label, transMapIdToAcc(lf->name));
 
 transMapInfoFree(&info);
@@ -149,22 +149,25 @@
 
 static void transMapMethods(struct track *tg)
 /* Make track for transMap alignments. */
 {
 tg->loadItems = loadTransMap;
 tg->itemName = refGeneName;
 tg->mapItemName = linkedFeaturesName;
 tg->itemDataName = transMapGetItemDataName;
 }
 
 void transMapRegisterTrackHandlers()
 /* register track handlers for transMap tracks */
 {
 registerTrackHandler("transMap", transMapMethods);
 
+if (0)
+    { /// FIXME
 // FIXME: legacy, this can be removed once trackDb files with trackHandler
-// attributes are ushed
+// attributes are pushed
 registerTrackHandler("transMapAlnRefSeq", transMapMethods);
 registerTrackHandler("transMapAlnMRna", transMapMethods);
 registerTrackHandler("transMapAlnSplicedEst", transMapMethods);
 registerTrackHandler("transMapAlnUcscGenes", transMapMethods);
     }
+}