Commits for hiram

v343_base to v344_preview (2017-01-09 to 2017-01-16) v344

c26bea0c9dd5b61a617482c7f350e9d659c5695b Mon Jan 9 13:39:56 2017 -0800

• Great tit birds male and female Luc Viatour and Francis C. Franklin wikimedia commons refs #18629
  • src/hg/htdocs/images/Parus_major.jpg - lines changed 0, context: html, text, full: html, text (a binary file or whitespace-only change shows no diff)

4fac872bbc8f95a8b0e8c20b78060f904616d788 Wed Jan 11 13:17:34 2017 -0800

• starting pair wise alignments for conservation track refs #18656
  • src/hg/makeDb/doc/rn6.txt - lines changed 126, context: html, text, full: html, text

58b581be4a544f41a1c1f780cce6cf696404d859 Thu Jan 12 14:08:28 2017 -0800

• running up melGal5 assembly for rn6 conservation track refs #18656
  • src/hg/makeDb/trackDb/makefile - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/turkey/melGal5/description.html - lines changed 64, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/turkey/melGal5/gap.html - lines changed 31, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/turkey/melGal5/gold.html - lines changed 34, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/turkey/melGal5/trackDb.ra - lines changed 8, context: html, text, full: html, text

674c373d41c24a782250680d5d7a05efd4c37e36 Thu Jan 12 14:14:40 2017 -0800

• running up melGal5 assembly for rn6 conservation track refs #18656
  • src/hg/makeDb/doc/melGal5/initialBuild.txt - lines changed 774, context: html, text, full: html, text

2b3a3a7e0a73e7bdc1e89c8e1324969cfc234e45 Fri Jan 13 13:22:48 2017 -0800

• adding galVar1 Malayan flying lemur no redmine
  • src/hg/makeDb/trackDb/human/chainNetPlacental.ra - lines changed 17, context: html, text, full: html, text

2516bdd7c30a701809caed89993ea908dc214b02 Fri Jan 13 13:25:48 2017 -0800

• correct breaks after bioproject and biosample links refs #16036
  • src/hg/makeDb/trackDb/bonobo/panPan2/description.html - lines changed 2, context: html, text, full: html, text

885c57680136498fea0deea8c266bf2dc9dea22d Fri Jan 13 13:38:30 2017 -0800

• fixup Accession ID instead of GenBank ID refs #18190
  • src/hg/utils/automation/makeGenomeDb.pl - lines changed 2, context: html, text, full: html, text

372174509cdfee7ea961ec4a2cff3cfac94b34ea Fri Jan 13 13:43:15 2017 -0800

• updates to manage refseq and genbank assemblies refs #13553
  • src/hg/utils/automation/asmHubAssembly.pl - lines changed 3, context: html, text, full: html, text
  • src/hg/utils/automation/asmHubGatewayPage.pl - lines changed 49, context: html, text, full: html, text
  • src/hg/utils/automation/asmHubTrackDb.sh - lines changed 17, context: html, text, full: html, text
  • src/hg/utils/automation/doAssemblyHub.pl - lines changed 10, context: html, text, full: html, text

cb115041463789857e79bbffafb129f91a38c3d9 Fri Jan 13 14:14:55 2017 -0800

• initial contents for mouse VCF track refs #13553
  • src/hg/makeDb/trackDb/mouse/mm10/strainSNPs.html - lines changed 53, context: html, text, full: html, text

43fe4d12a52519dfe90fbceb040d4456e5840069 Mon Jan 16 09:54:21 2017 -0800

• v344 preview1 refs #18555
  • src/utils/qa/weeklybld/buildEnv.csh - lines changed 2, context: html, text, full: html, text