Commits for braney

v344_preview to v344_preview2 (2017-01-16 to 2017-01-23) v344

c84cfb3709fec4c63ae72505aba7cc32dd359039 Mon Jan 16 11:41:46 2017 -0800

• add maskBed option to twoBitInfo to get a bed file of masked regions
  • src/inc/twoBit.h - lines changed 3, context: html, text, full: html, text
  • src/lib/twoBit.c - lines changed 14, context: html, text, full: html, text
  • src/utils/twoBitInfo/twoBitInfo.c - lines changed 9, context: html, text, full: html, text

f04df66eae07dfd571642966b1d787256ffaf825 Wed Jan 18 14:32:49 2017 -0800

• cytoBandIdeogram on assembly hubs
  • src/hg/hgTracks/cytoBandTrack.c - lines changed 19, context: html, text, full: html, text
  • src/hg/hgTracks/hgTracks.c - lines changed 1, context: html, text, full: html, text
  • src/hg/hgTracks/simpleTracks.c - lines changed 3, context: html, text, full: html, text

1ca2e540f98dbccb901ef62e817134938490e283 Wed Jan 18 15:31:47 2017 -0800

• add halSnake.html placeholder file
  • src/hg/htdocs/goldenPath/help/halSnake.html - lines changed 230, context: html, text, full: html, text

dda7a3380df40e03883c7f87c550dfb0783a01c0 Wed Jan 18 15:42:42 2017 -0800

• remove halSnake.html for now
  • src/hg/htdocs/goldenPath/help/halSnake.html - lines changed 230, context: html, text, full: html, text

dddf90a21a081997714d5c21377a7d0c4aaa60ee Thu Jan 19 10:40:22 2017 -0800

• ignore Genbank tables in assembly databases
  • src/hg/makeDb/schema/all.joiner - lines changed 25, context: html, text, full: html, text

b57fa67c3b39df42ccbcfe7557256189e394ccc2 Thu Jan 19 15:19:41 2017 -0800

• fixes #18696 crashing trying to revComp missing sequence
  • src/hg/hgTracks/bigBedTrack.c - lines changed 1, context: html, text, full: html, text

8c68e89af6e4c31c81b2a1ab5fe4c9b1f990525e Fri Jan 20 09:31:45 2017 -0800

• change usage message to point out that bigPsl is now bigBed 12+13
  • src/hg/utils/pslToBigPsl/pslToBigPsl.c - lines changed 1, context: html, text, full: html, text

cd7d619b719b47081e1f13943cd1dcd0d655fc6b Fri Jan 20 09:42:23 2017 -0800

• update bigPsl.html to specify that it's 12+13
  • src/hg/htdocs/goldenPath/help/bigPsl.html - lines changed 8, context: html, text, full: html, text