Commits for kent
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v344_preview to v344_preview2 (2017-01-16 to 2017-01-23) v344
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f410105db0b3a911e646540347a9f77eacd62923 Wed Jan 18 12:20:23 2017 -0800
- Improving according to Max's feedback. In particular this avoids outputting blank fields, and also weights fields in deciding which one to partition on first in a way that works better for the big data set Max found.
- src/tagStorm/tagStormFromTab/tagStormFromTab.c - lines changed 112, context: html, text, full: html, text
49d86cd9b0e9281c9f55cf2fe44291cdfe3cea2f Thu Jan 19 11:20:01 2017 -0800
- Cleaning up more memory. Better inclusion of fields.
- src/tagStorm/tagStormFromTab/tagStormFromTab.c - lines changed 2, context: html, text, full: html, text
1c59685f3b4193f062ea8c52c884593ee5dd5e8d Thu Jan 19 14:34:01 2017 -0800
- Put in a new method for calculating the divs, which is now default. Use the 'local' flag to get the old way. I'm likely to simplify the old way soon.
- src/tagStorm/tagStormFromTab/tagStormFromTab.c - lines changed 206, context: html, text, full: html, text
cd6894da275f1408964f9e42ba7490c0a4c2b622 Thu Jan 19 15:24:03 2017 -0800
- Cleaning up some memory.
- src/tagStorm/tagStormFromTab/tagStormFromTab.c - lines changed 99, context: html, text, full: html, text
77325cc1b1dc7cde1a835f6163d5a17624d0c958 Thu Jan 19 19:16:02 2017 -0800
- updating test set
- src/tagStorm/tagStormHoist/expected.out - lines changed 70, context: html, text, full: html, text
- src/tagStorm/tagStormHoist/test.in - lines changed 2, context: html, text, full: html, text
d1ea4d0bc9a04dd97b213728eb9e6682b5826ad2 Thu Jan 19 19:17:19 2017 -0800
- Refactoring a bit in anticipation of moving code to library.
- src/tagStorm/tagStormHoist/tagStormHoist.c - lines changed 23, context: html, text, full: html, text
cec3ab53880681ae1792a643f9c9e81fb9325571 Thu Jan 19 19:19:38 2017 -0800
- Moving tagStormHoist code to library.
- src/tagStorm/tagStormHoist/tagStormHoist.c - lines changed 110, context: html, text, full: html, text
cdfb695ee8fc4dcb613e443f602cd526b4d250aa Thu Jan 19 23:47:48 2017 -0800
- Adding tagStormHoist to tagSTorm.h, also making it so that the function will put in a single root node for forests, so can have a place to hoist tags shared by all in that case.
4f252b105cea62a65ef611f1c122a53ea1b98e9f Thu Jan 19 23:49:18 2017 -0800
- Making it hoist by default at end (but adding a noHoist option). Also makinga debugging dump function go to stderr rather than stdout.
- src/tagStorm/tagStormFromTab/tagStormFromTab.c - lines changed 7, context: html, text, full: html, text
1a3364b243b46f7cf3afe58688d6a8cc85e726cf Fri Jan 20 09:58:44 2017 -0800
- Adding rowCount to fieldedTable and refactoring tagStormFromTab a bit.
- src/tagStorm/tagStormFromTab/tagStormFromTab.c - lines changed 103, context: html, text, full: html, text
63969df56a4c7d3728052a8a8a1577ab0cef0c2d Fri Jan 20 11:13:57 2017 -0800
- Making local partitioning use same scoring scheme as global partitioning.
- src/tagStorm/tagStormFromTab/tagStormFromTab.c - lines changed 420, context: html, text, full: html, text
1a84329d8f1d64d817bb479e6475e64bb7b06eab Fri Jan 20 17:43:37 2017 -0800
- Calculating size of predictor chain to aid partitioning. Adding more info to dumps for debugging.
- src/tagStorm/tagStormFromTab/tagStormFromTab.c - lines changed 50, context: html, text, full: html, text
6762c9714af0d2d3fd83a9a10597d92ab6e170d6 Sat Jan 21 08:00:29 2017 -0800
- Exposing tagType functions tagTypeInfoNew and tagTypeInfoAdd to other modules and writing tagTypeInfoFree for benefit of tagStormFromTab.
9f47439d246bdf7624581fb48e75edcceae8a3e0 Sat Jan 21 08:01:21 2017 -0800
- Discouraging partitioning on numerical fields, especially non-integer ones.
- src/tagStorm/tagStormFromTab/tagStormFromTab.c - lines changed 45, context: html, text, full: html, text
e9277b1493ec38adef034a36778b3353430e8f16 Sat Jan 21 08:07:56 2017 -0800
- Removing unused routines and making all routines except main static.
- src/tagStorm/tagStormFromTab/tagStormFromTab.c - lines changed 117, context: html, text, full: html, text
813873c75553cc797a25514a86e3d4f7d9511122 Sat Jan 21 09:32:39 2017 -0800
- Adjusting verbosity levels.
- src/tagStorm/tagStormFromTab/tagStormFromTab.c - lines changed 15, context: html, text, full: html, text
e3c2c344823583895d01c4ac539d18d96c2558fe Sat Jan 21 09:59:45 2017 -0800
- Fixing memory leaks
- src/tagStorm/tagStormFromTab/tagStormFromTab.c - lines changed 5, context: html, text, full: html, text
5eee234b477ed74599b35af7cbad1de195fae16b Sat Jan 21 14:18:32 2017 -0800
- Adding cmpStringOrder routine to force order to conform to a predefined explicit nonalphabetical order.
387fdf87c4514e568a9c4c4685fba8d0b0f3c7cd Sat Jan 21 14:19:54 2017 -0800
- Adding sort routines for fields in stanzas.
653d5099ccc1a73d3663e6b0b8ad8fcadb8e1c2f Sat Jan 21 14:22:06 2017 -0800
- Making it sort tags in stanzas alphabetically by default, and have an option that explicitly keeps same order as input tab-separated-file. It used to end up with order that largely followed input order, but had some random elements. Had to define a new sorting routine to get back old order in this case.
- src/tagStorm/tagStormFromTab/tagStormFromTab.c - lines changed 15, context: html, text, full: html, text
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