All File Changes

v345_preview2 to v345_base (2017-02-13 to 2017-02-20) v345

• python/lib/ucscGb/qa/tables/factory.py
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    cddaecf4812321f3bdc70341a86d82cf0ac26da9 Wed Feb 15 09:28:15 2017 -0800
    Adding new big* types to factory.py. Changed how pslQa.py creates itemSizes and chromSizes files. Uses built-in tempfile functions to create so they are automatically cleaned up on program close. no redmine
• python/lib/ucscGb/qa/tables/pslQa.py
  • lines changed 14, context: html, text, full: html, text
    cddaecf4812321f3bdc70341a86d82cf0ac26da9 Wed Feb 15 09:28:15 2017 -0800
    Adding new big* types to factory.py. Changed how pslQa.py creates itemSizes and chromSizes files. Uses built-in tempfile functions to create so they are automatically cleaned up on program close. no redmine
• src/hg/cirm/cdw/cdwWebBrowse/cdwWebBrowse.c
  • lines changed 2, context: html, text, full: html, text
    165c47b371042ea8f0c0bbfe3a9fce06b8767344 Mon Feb 13 13:35:12 2017 -0800
    oops puts was supplying newlines. refs #18737.
• src/hg/cirm/cdw/wrangle/maniMani/maniMani
  • lines changed 29, context: html, text, full: html, text
    713ed8974ee07a0fc1db487d382c5bc3bef090a9 Mon Feb 13 15:42:08 2017 -0800
    Making the script a bit more robust, adding in some features requested by Jim and Clay, refs #16113
• src/hg/encode/hgEncodeVocab/hgEncodeVocab.c
  • lines changed 1, context: html, text, full: html, text
    313531099a6e334521a493a0fa296b1738ee93a7 Wed Feb 15 15:18:59 2017 -0800
    Trying to make sure that js blocks end with a newline, and often a semi-colon before that. This causes trouble for short fragments of js that used to be able to skate by without it. Now that they are joined into larger blocks of js, the proper puncutation is required. refs #18538
• src/hg/hgBlat/hgBlat.c
  • lines changed 2, context: html, text, full: html, text
    313531099a6e334521a493a0fa296b1738ee93a7 Wed Feb 15 15:18:59 2017 -0800
    Trying to make sure that js blocks end with a newline, and often a semi-colon before that. This causes trouble for short fragments of js that used to be able to skate by without it. Now that they are joined into larger blocks of js, the proper puncutation is required. refs #18538
• src/hg/hgGtexTrackSettings/hgGtexTrackSettings.c
  • lines changed 1, context: html, text, full: html, text
    c9e1a0dfc1cd2ce34690c5a889a93386fcd17c6d Mon Feb 13 15:39:35 2017 -0800
    Need JS functions in utils.js (also used by GTEx hgc, right-click config page) to manage enable/disable of view limits input. Sadly doesn't grey out text still.
• src/hg/hgLogin/hgLogin.c
  • lines changed 7, context: html, text, full: html, text
    fb54b782482ebcc05df2647776f624ddea8301e4 Wed Feb 15 14:18:02 2017 -0800
    fixes minor javascript syntax issues, missing semi-colon and newline. refs #18538
• src/hg/hgTables/filterFields.c
  • lines changed 2, context: html, text, full: html, text
    c185c5bbae11a20d912e82f544dfe6f5ef5818bf Mon Feb 13 15:41:54 2017 -0800
    Giving function better name. CSP changes. Review feedback. refs #18737
• src/hg/hgTables/genomeSpace.c
  • lines changed 2, context: html, text, full: html, text
    313531099a6e334521a493a0fa296b1738ee93a7 Wed Feb 15 15:18:59 2017 -0800
    Trying to make sure that js blocks end with a newline, and often a semi-colon before that. This causes trouble for short fragments of js that used to be able to skate by without it. Now that they are joined into larger blocks of js, the proper puncutation is required. refs #18538
• src/hg/hgTracks/bedTrack.c
  • lines changed 3, context: html, text, full: html, text
    3a205c8bb38613843ba7e17cbde5e9ec278a5eb5 Wed Feb 15 14:09:28 2017 -0800
    check in fix for brain-dead code causing bug in #18839
  • lines changed 14, context: html, text, full: html, text
    d162dfbe424e317de51074ce592b48a16d882d06 Fri Feb 17 15:22:05 2017 -0800
    fix weird bug with right-click dialogs that don't set cart variables for ui variables that didn't chage.
• src/hg/hgTracks/bigBedTrack.c
  • lines changed 14, context: html, text, full: html, text
    6b60107926297f1aea89d0a5817970d10bebe78d Fri Feb 17 10:19:57 2017 -0800
    support chrom,chromStart, and chromEnd as bigBed labels
• src/hg/hgTracks/extTools.c
  • lines changed 1, context: html, text, full: html, text
    313531099a6e334521a493a0fa296b1738ee93a7 Wed Feb 15 15:18:59 2017 -0800
    Trying to make sure that js blocks end with a newline, and often a semi-colon before that. This causes trouble for short fragments of js that used to be able to skate by without it. Now that they are joined into larger blocks of js, the proper puncutation is required. refs #18538
• src/hg/hgTracks/gtexTracks.c
  • lines changed 10, context: html, text, full: html, text
    c40e54eddbe415b7cc50cd4b828948bf416958ac Mon Feb 13 16:03:32 2017 -0800
    cleanup removing obsolete gtext function.
• src/hg/hgTracks/imageV2.c
  • lines changed 2, context: html, text, full: html, text
    f041be1ae3ccc37baa7b0e8e27780d3cb64557ae Mon Feb 13 16:05:20 2017 -0800
    code cleanup.
• src/hg/hgcentralTidy/hgcentralTidy.c
  • lines changed 7, context: html, text, full: html, text
    319b5a2b4da69b9d20be21ce493e2c51c8891d87 Mon Feb 13 16:08:20 2017 -0800
    code cleanup.
• src/hg/htdocs/FAQ/FAQlicense.html
  • lines changed 2, context: html, text, full: html, text
    8b40db5da94c3552d664c9ecb8f50971d0b28844 Wed Feb 15 09:56:31 2017 -0800
    Adding gbsWarnText to a few more pages, refs #18774
• src/hg/htdocs/FAQ/FAQmaillist.html
  • lines changed 2, context: html, text, full: html, text
    8b40db5da94c3552d664c9ecb8f50971d0b28844 Wed Feb 15 09:56:31 2017 -0800
    Adding gbsWarnText to a few more pages, refs #18774
• src/hg/htdocs/FAQ/FAQreleases.html
  • lines changed 3, context: html, text, full: html, text
    8d12a8fd089a377cfeb30c8cce1ff74d3f481a6b Mon Feb 13 14:07:37 2017 -0800
    Added gbsWarnText class to change text color to red for warning messages. Refs #18774
  • lines changed 4, context: html, text, full: html, text
    7fe31517a9b1d5d6d6adc669fd9fe411adf9fe3f Mon Feb 13 14:11:53 2017 -0800
    Added one more gbsWarnText tag. Refs #18774
• src/hg/htdocs/FAQ/FAQtracks.html
  • lines changed 26, context: html, text, full: html, text
    880883474f95364ee02d579dc4a62d75ea25e493 Mon Feb 13 13:59:09 2017 -0800
    Removed SNP item (#13) per Angie -- very out of date.
• src/hg/htdocs/Neandertal/index.html
  • lines changed 1, context: html, text, full: html, text
    3a9ce6d9d2d72ce6acc98787076570c6b24edf0d Fri Feb 17 12:53:50 2017 -0800
    Changing links to old genomics institute site to new site, refs #14220
• src/hg/htdocs/admin/mirror.html
  • lines changed 2, context: html, text, full: html, text
    8eb2e49f870c0c8e633ba2be209d75bc4f1f2853 Wed Feb 15 08:53:25 2017 -0800
    Adding class gbsWarnText to a few more spots mentioning the mailing list, refs #18774
• src/hg/htdocs/goldenPath/help/bigPsl.html
  • lines changed 1, context: html, text, full: html, text
    64745d4e3710e019a309bdc14b03bd6d31154ddf Fri Feb 17 14:00:58 2017 -0800
    Removing reference to edit list in bigPsl.as description on bigPsl.html, refs #18741
• src/hg/htdocs/goldenPath/help/customTrackText.html
  • lines changed 2, context: html, text, full: html, text
    8eb2e49f870c0c8e633ba2be209d75bc4f1f2853 Wed Feb 15 08:53:25 2017 -0800
    Adding class gbsWarnText to a few more spots mentioning the mailing list, refs #18774
  • lines changed 8, context: html, text, full: html, text
    c7b6c05576f076b0a230d8b31d00fec194aab3ea Fri Feb 17 13:13:17 2017 -0800
    Adding back some removed text based on CR, refs #18564 #7380
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    7d7c9d75a7e31d4acb3ae704e377e8727a058a4f Fri Feb 17 13:48:57 2017 -0800
    Adding also to sentence, no redmine
• src/hg/htdocs/goldenPath/help/gbic.html
  • lines changed 1, context: html, text, full: html, text
    7d50bb6a0728a94c112fc6d712f4757f8b1934c0 Thu Feb 16 09:33:20 2017 -0800
    Fixing minor typo, no RM
• src/hg/htdocs/goldenPath/help/haplotypes.html
  • lines changed 10, context: html, text, full: html, text
    8d12a8fd089a377cfeb30c8cce1ff74d3f481a6b Mon Feb 13 14:07:37 2017 -0800
    Added gbsWarnText class to change text color to red for warning messages. Refs #18774
• src/hg/htdocs/goldenPath/help/hgBamTrackHelp.html
  • lines changed 1, context: html, text, full: html, text
    8bf250b20c7175f107ef5b18d35675540fb77a99 Mon Feb 13 16:14:31 2017 -0800
    Fixed a spurious uppercase tag. Refs #18774
• src/hg/htdocs/goldenPath/help/multiRegionHelp.html
  • lines changed 1, context: html, text, full: html, text
    84f4416f60627af3761d7cdf1415f344f7f04838 Mon Feb 13 14:21:30 2017 -0800
    Removed spurious strong tag in Contents section. Refs #18774
• src/hg/htdocs/goldenPath/help/mysql.html
  • lines changed 3, context: html, text, full: html, text
    8d12a8fd089a377cfeb30c8cce1ff74d3f481a6b Mon Feb 13 14:07:37 2017 -0800
    Added gbsWarnText class to change text color to red for warning messages. Refs #18774
  • lines changed 22, context: html, text, full: html, text
    6140d595a303099155ac6f518feef66fdcd4211b Fri Feb 17 13:18:40 2017 -0800
    Adding mention of hgsql and hgsqldump to mysql details page, refs #9058
  • lines changed 10, context: html, text, full: html, text
    90ebbccbe1b8a99fac85f27a51a70c6a9a54d3fb Fri Feb 17 14:53:59 2017 -0800
    Removing mention of hgsqldump as it doesn't work with the public mysql server, refs #9058
• src/hg/htdocs/goldenPath/help/trackDb/trackDbDoc.html
  • lines changed 1, context: html, text, full: html, text
    b792b9ace15785c5922a518a8855e02170456a34 Wed Feb 15 10:59:19 2017 -0800
    Fixing visibilility typo in trackDbDoc.html
• src/hg/htdocs/goldenPath/help/trackDb/trackDbHub.v2.html
  • lines changed 3, context: html, text, full: html, text
    86905663719b3b06a5efc6557bd5ac86c96369f1 Thu Feb 16 13:15:19 2017 -0800
    Fixing typo around labelSeparator section and adding in some missing anchor links to new label features, refs #18782
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    451df01de5379f4a8341f441e03350e50afce4b3 Thu Feb 16 13:47:43 2017 -0800
    Adding more missing anchor links for halSnake settings, refs #18413
• src/hg/htdocs/goldenPath/help/trackDb/trackDbLibrary.shtml
  • lines changed 1, context: html, text, full: html, text
    9a2e0ac0fee9648b7e7ba5ac672e3f130e4f6c1e Wed Feb 15 09:44:19 2017 -0800
    fixed typo
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    86905663719b3b06a5efc6557bd5ac86c96369f1 Thu Feb 16 13:15:19 2017 -0800
    Fixing typo around labelSeparator section and adding in some missing anchor links to new label features, refs #18782
• src/hg/htdocs/goldenPath/newsarch.html
  • lines changed 22, context: html, text, full: html, text
    5584757526a0e5bbf66d7c28a637c86b8c799c47 Thu Feb 16 16:12:32 2017 -0800
    Adding news for keyboard shortcuts, refs #18803
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    d09a650a9b0acdc52fefd1c6bef040b6592639bc Thu Feb 16 16:28:50 2017 -0800
    Making columns for ever-growing year list on newsarch, no RM
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    3a9ce6d9d2d72ce6acc98787076570c6b24edf0d Fri Feb 17 12:53:50 2017 -0800
    Changing links to old genomics institute site to new site, refs #14220
• src/hg/htdocs/images/Acinonyx_jubatus.jpg
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    8a282301f2daa9bfc0bf67e1795e37403b2a96f9 Sat Feb 18 22:26:33 2017 -0800
    WikiMedia Commons: Hein Waschefort https://commons.wikimedia.org/wiki/File:Cheetah_chase.jpg refs #18785
• src/hg/htdocs/images/Alligator_sinensis.jpg
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    fac21cdb6cda98c70070b52d74a495e079016b7e Wed Feb 15 20:06:49 2017 -0800
    'WikiMedia Commons: Lokionly https://commons.wikimedia.org/wiki/User:Lokionly'
• src/hg/htdocs/images/Alligator_sinensis.png
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    660ff247d50ba8f436a36c72cc48c7ba33e60cbf Wed Feb 15 15:38:34 2017 -0800
    WikiMedia Commons: Lokionly https://commons.wikimedia.org/wiki/User:Lokionly
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    aef10aa9a7f28cd886abeb7e602913233223eb5c Wed Feb 15 20:27:41 2017 -0800
    better named .jpg for smaller images
• src/hg/htdocs/images/Aotus_nancymaae.jpg
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    93f7cdefe548666d12a3d5e00f4d07c0feb7055e Wed Feb 15 20:08:14 2017 -0800
    'WikiMedia Commons: MarcSaCi https://commons.wikimedia.org/wiki/File:Aotus.jpeg'
• src/hg/htdocs/images/Aotus_nancymaae.png
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    8e5f1dd167862b12344915e298d07762daee9e76 Wed Feb 15 10:27:41 2017 -0800
    WikiMedia Commons: MarcSaCi https://commons.wikimedia.org/wiki/File:Aotus.jpeg refs #18785
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    aef10aa9a7f28cd886abeb7e602913233223eb5c Wed Feb 15 20:27:41 2017 -0800
    better named .jpg for smaller images
• src/hg/htdocs/images/Bos_indicus.jpg
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    a89d75f7ba3b56365f39358afe7e467aa12bdd0e Thu Feb 16 16:56:43 2017 -0800
    ABS: Progresso Genético gerando Lucro https://www.abspecplan.com.br/7308
• src/hg/htdocs/images/Bos_mutus.jpg
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    543362e7db1758c03f3f32c61185c5a812da7ad0 Thu Feb 16 15:21:24 2017 -0800
    WikiMedia Commons: Alex Ang http://www.panoramio.com/user/655646?with_photo_id=7390043 refs #18785
• src/hg/htdocs/images/Bubalus_bubalis.jpg
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    c55a8f52e34d23c10166a7cd0178564f672dfe78 Thu Feb 16 13:35:35 2017 -0800
    'Djambalawa http://wildfoto.smugmug.com/ refs #18785'
• src/hg/htdocs/images/Camelus_bactrianus.jpg
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    e1d7f2b79842de56caf5d1045f878262670971cc Thu Feb 16 13:35:42 2017 -0800
    'WikiMedia Commons: Andrea Pavanello https://commons.wikimedia.org/wiki/User:Pava refs #18785'
• src/hg/htdocs/images/Camelus_dromedarius.jpg
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    43be5caab98b1407fd292a94f238ff1f18656c16 Thu Feb 16 13:35:47 2017 -0800
    'WikiMedia Commons: Florian Prischl https://commons.wikimedia.org/wiki/User:Florian_Prischl refs #18785'
• src/hg/htdocs/images/Capra_hircus.jpg
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    5481ce19b51e3b85ec079ab15491402d405b25e4 Thu Feb 16 13:35:55 2017 -0800
    'WikiMedia Commons: Petruss https://commons.wikimedia.org/wiki/User:Petruss refs #18785'
• src/hg/htdocs/images/Carlito_syrichta.jpg
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    cf5be898ec78b5386de9a2041d0022fd00f71984 Wed Feb 15 20:10:17 2017 -0800
    '(C) 2008 Pierre Fidenci (UC Berkeley) http://calphotos.berkeley.edu/cgi/img_query?seq_num=242955&one=T'
• src/hg/htdocs/images/Carlito_syrichta.png
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    16709efd9a101463d677dc61fcca7c9934dd2f88 Wed Feb 15 10:21:41 2017 -0800
    (C) 2008 Pierre Fidenci (UC Berkeley) http://calphotos.berkeley.edu/cgi/img_query?seq_num=242955&one=T refs #18785
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    aef10aa9a7f28cd886abeb7e602913233223eb5c Wed Feb 15 20:27:41 2017 -0800
    better named .jpg for smaller images
• src/hg/htdocs/images/Cebus_capucinus_imitator.jpg
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    7c6e920ebd121cc22075459dff2b3dcfa305c6a8 Wed Feb 15 20:10:23 2017 -0800
    'WikiMedia Commons: Postdlf https://commons.wikimedia.org/wiki/User:Postdlf'
• src/hg/htdocs/images/Cebus_capucinus_imitator.png
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    c8b34c49352c39999cd72af4c9e4f33c64091695 Wed Feb 15 10:40:10 2017 -0800
    WikiMedia Commons: Postdlf https://commons.wikimedia.org/wiki/User:Postdlf refs #18785
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    aef10aa9a7f28cd886abeb7e602913233223eb5c Wed Feb 15 20:27:41 2017 -0800
    better named .jpg for smaller images
• src/hg/htdocs/images/Cercocebus_atys.jpg
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    2d48584beeb03fb6ef4c81d85c73b302cc72d188 Wed Feb 15 20:10:29 2017 -0800
    'WikiMedia Commons: Year of the Dragon https://commons.wikimedia.org/wiki/User:Yearofthedragon'
• src/hg/htdocs/images/Cercocebus_atys.png
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    ed6e433bd2e3999c81b73c66ff64e210adef3afd Wed Feb 15 10:41:44 2017 -0800
    WikiMedia Commons: Year of the Dragon https://commons.wikimedia.org/wiki/User:Yearofthedragon refs #18785
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    aef10aa9a7f28cd886abeb7e602913233223eb5c Wed Feb 15 20:27:41 2017 -0800
    better named .jpg for smaller images
• src/hg/htdocs/images/Chelonia_mydas.jpg
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    5c8e6da30bacac465094e5efe2db9c89c043699e Wed Feb 15 20:10:35 2017 -0800
    'TheBrockenInaGlory https://sites.google.com/site/thebrockeninglory/'
• src/hg/htdocs/images/Chelonia_mydas.png
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    02e66f49a492cc661afb0a214e3c98a2973375c9 Wed Feb 15 15:36:57 2017 -0800
    TheBrockenInaGlory https://sites.google.com/site/thebrockeninglory/ refs #18785
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    aef10aa9a7f28cd886abeb7e602913233223eb5c Wed Feb 15 20:27:41 2017 -0800
    better named .jpg for smaller images
• src/hg/htdocs/images/Chrysochloris_asiatica.jpg
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    797abd80218654623bc26b6a910d06b52ea302b2 Thu Feb 16 15:39:33 2017 -0800
    WikiMedia Commons: Jon Richfield https://commons.wikimedia.org/wiki/User:JonRichfield refs #18785
• src/hg/htdocs/images/Condylura_cristata.jpg
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    bb8dbdfc38869fa247132c7885d04a59937eb309 Thu Feb 16 13:36:01 2017 -0800
    'U.S. National Park https://www.nps.gov/sacn/learn/nature/mammals.htm refs #18785'
• src/hg/htdocs/images/Crocodylus_porosus.jpg
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    6d23bc07cf98e8a55897fffba680cc48af6bed1a Wed Feb 15 20:10:42 2017 -0800
    'fvanrenterghem (flickr) https://www.flickr.com/photos/fvanrenterghem/'
• src/hg/htdocs/images/Crocodylus_porosus.png
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    90dc9b3bda23b481fe3760b20831ff1587a56cbb Wed Feb 15 15:54:01 2017 -0800
    fvanrenterghem (flickr) https://www.flickr.com/photos/fvanrenterghem/
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    aef10aa9a7f28cd886abeb7e602913233223eb5c Wed Feb 15 20:27:41 2017 -0800
    better named .jpg for smaller images
• src/hg/htdocs/images/Eptesicus_fuscus.jpg
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    2608f7d2d1ae94ae8579fad63ff468bbe8ca1615 Thu Feb 16 13:36:06 2017 -0800
    'WikiMedia Commons: Dolovis https://commons.wikimedia.org/wiki/User:Dolovis refs #18785'
• src/hg/htdocs/images/Equus_asinus.jpg
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    84062721c11ac5e99840dcf5770e5813e42be4db Sat Feb 18 22:10:48 2017 -0800
    A. Davey - https://upload.wikimedia.org/wikipedia/commons/3/35/Innocence_%283426318415%29.jpg refs #18785
• src/hg/htdocs/images/Fukomys_damarensis.jpg
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    d66a87d1f3bfb93189fe9e3454446231d13ac7c8 Thu Feb 16 13:36:12 2017 -0800
    'Sharry Goldman http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0007477 refs #18785'
• src/hg/htdocs/images/Gavialis_gangeticus.jpg
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    db6a633fbf8cfdbed2dd88df12d4ccbe45c335fc Wed Feb 15 20:12:20 2017 -0800
    'Matěj "Dědek" Baťha https://commons.wikimedia.org/wiki/User:Jedudedek'
• src/hg/htdocs/images/Gavialis_gangeticus.png
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    419e424523c720bbd6dd1dd552ce9ed8999a26ae Wed Feb 15 16:07:15 2017 -0800
    WikiMedia Commons: Mat#j "D#dek" Ba#ha https://commons.wikimedia.org/wiki/User:Jedudedek
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    aef10aa9a7f28cd886abeb7e602913233223eb5c Wed Feb 15 20:27:41 2017 -0800
    better named .jpg for smaller images
• src/hg/htdocs/images/Gekko_japonicus.jpg
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    89b1afc08c8f02eace37dc307152ea3739fb7b03 Wed Feb 15 20:13:11 2017 -0800
    'WikiMedia Commons: Alpsdrake https://commons.wikimedia.org/wiki/User:Alpsdake'
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    better named .jpg for smaller images
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    'WikiMedia Commons: Daderot https://commons.wikimedia.org/wiki/User:Daderot refs #18785'
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    'WikiMedia Commons: Mnmazur https://en.wikipedia.org/wiki/User:Mnmazur refs #18785'
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    'Cliff (flickr) https://www.flickr.com/photos/nostri-imago/ refs #18785'
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    'WikiMedia Commons: Cymothoa exigua https://commons.wikimedia.org/wiki/User:Cymothoa_exigua'
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    WikiMedia Commons: Cymothoa exigua https://commons.wikimedia.org/wiki/User:Cymothoa_exigua refs #18785
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    better named .jpg for smaller images
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    'WikiMedia Commons: Godot13 https://commons.wikimedia.org/wiki/User:Godot13 refs #18785'
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    'WikiMedia Commons: Stacigh https://en.wikipedia.org/wiki/File:BaijiDolphin.jpg refs #18785'
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    'WikiMedia Commons: Hectonichus https://commons.wikimedia.org/wiki/User:Hectonichus'
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    WikiMedia Commons: Hectonichus https://commons.wikimedia.org/wiki/User:Hectonichus refs #18785
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    better named .jpg for smaller images
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    'WikiMedia Commons: Clément Bardot https://commons.wikimedia.org/wiki/User:Cl%C3%A9ment_Bardot'
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    WikiMedia Commons: Clément Bardot https://commons.wikimedia.org/wiki/User:Cl%C3%A9ment_Bardot refs #18785
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    better named .jpg for smaller images
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    'WikiMedia Commons: Piekfrosch https://de.wikipedia.org/wiki/Benutzer:Piekfrosch refs #18785'
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    WikiMedia Commons: François Trazzi https://upload.wikimedia.org/wikipedia/commons/2/26/Marmota_marmota_Alpes2.jpg refs #18785
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    b9c6c71621bc12631c6df20faed45504d172760e Thu Feb 16 13:49:23 2017 -0800
    correct name without trailing _
• src/hg/htdocs/images/Mesocricetus_auratus_.jpg
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    'WikiMedia Commons: Adamjennison111 https://en.wikipedia.org/wiki/User:Adamjennison111 refs #18785'
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    526466a9a74f97a0c6916ab21880ab4635d9126e Thu Feb 16 13:52:23 2017 -0800
    correct name without trailing _
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    e82ab03d41732ea5473087a1a1fbdc8adaa6e054 Thu Feb 16 13:36:58 2017 -0800
    'WikiMedia Commons: Snowmanradio https://commons.wikimedia.org/wiki/User:Snowmanradio refs #18785'
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    5e1558b1380e6d2f04ecc2e1b02e99f7ff71bb0b Thu Feb 16 17:10:00 2017 -0800
    Captain Budd Christman, NOAA Corps http://www.photolib.noaa.gov/htmls/anim0022.htm
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    WikiMedia Commons: Masur https://pl.wikipedia.org/wiki/Wikipedysta:Masur refs #18785
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    'WikiMedia Commons: Anaxibia https://commons.wikimedia.org/wiki/User:Anaxibia refs #18785'
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    2bd7c90949e92252c744d58d3eaa22f22effed8f Thu Feb 16 13:37:10 2017 -0800
    'Gregory "Slobirdr" Smith (flickr) https://www.flickr.com/people/22170893@N06?rb=1 refs #18785'
• src/hg/htdocs/images/Physeter_catodon.jpg
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    'Gabriel Barathieu (flickr) https://www.flickr.com/photos/barathieu/7991520863/ refs #18785'
• src/hg/htdocs/images/Propithecus_coquereli.jpg
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    'Max Pixel http://maxpixel.freegreatpicture.com/'
• src/hg/htdocs/images/Propithecus_coquereli.png
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    bc53e94950cde2bcbd801178ca817ebbac3c29a7 Wed Feb 15 10:38:48 2017 -0800
    Max Pixel http://maxpixel.freegreatpicture.com/ refs #18785
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    aef10aa9a7f28cd886abeb7e602913233223eb5c Wed Feb 15 20:27:41 2017 -0800
    better named .jpg for smaller images
• src/hg/htdocs/images/Protobothrops_mucrosquamatus.jpg
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    'Rushen! (flickr) https://www.flickr.com/photos/rushen/'
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    Rushen! (flickr) https://www.flickr.com/photos/rushen/
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    aef10aa9a7f28cd886abeb7e602913233223eb5c Wed Feb 15 20:27:41 2017 -0800
    better named .jpg for smaller images
• src/hg/htdocs/images/Python_bivittatus.jpg
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    10a0f2bd0d1d8009f8238b802abebb143dafabf2 Wed Feb 15 20:13:44 2017 -0800
    'William Warby (Flickr) https://www.flickr.com/photos/wwarby'
• src/hg/htdocs/images/Python_bivittatus.png
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    2af3cb5f88ff32a3919813c7452dac04972fa134 Wed Feb 15 15:32:24 2017 -0800
    William Warby (Flickr) https://www.flickr.com/photos/wwarby refs #18785
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    better named .jpg for smaller images
• src/hg/htdocs/images/Thamnophis_sirtalis.png
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    Brian Gratwicke (Flickr) https://www.flickr.com/people/19731486@N07?rb=1
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    WikiMedia Commons: Alpsdrake https://commons.wikimedia.org/wiki/User:Alpsdake
• src/hg/htdocs/images/Ursus_maritimus.jpg
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    'Alan Wilson http://www.naturespicsonline.com/copyright refs #18785'
• src/hg/htdocs/images/Xenopus_laevis.jpg
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    'WikiMedia Commons: Holger Krisp, Ulm, Germany https://commons.wikimedia.org/wiki/User:Holleday'
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    WikiMedia Commons: Holger Krisp, Ulm, Germany https://commons.wikimedia.org/wiki/User:Holleday
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    better named .jpg for smaller images
• src/hg/htdocs/inc/gbFooter.html
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    3a9ce6d9d2d72ce6acc98787076570c6b24edf0d Fri Feb 17 12:53:50 2017 -0800
    Changing links to old genomics institute site to new site, refs #14220
• src/hg/htdocs/inc/gbsFooter.html
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    3a9ce6d9d2d72ce6acc98787076570c6b24edf0d Fri Feb 17 12:53:50 2017 -0800
    Changing links to old genomics institute site to new site, refs #14220
• src/hg/htdocs/inc/globalNavBar.inc
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    3a9ce6d9d2d72ce6acc98787076570c6b24edf0d Fri Feb 17 12:53:50 2017 -0800
    Changing links to old genomics institute site to new site, refs #14220
• src/hg/htdocs/inc/jWestFooter.html
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    3a9ce6d9d2d72ce6acc98787076570c6b24edf0d Fri Feb 17 12:53:50 2017 -0800
    Changing links to old genomics institute site to new site, refs #14220
• src/hg/htdocs/index.html
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    3a9ce6d9d2d72ce6acc98787076570c6b24edf0d Fri Feb 17 12:53:50 2017 -0800
    Changing links to old genomics institute site to new site, refs #14220
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    5584757526a0e5bbf66d7c28a637c86b8c799c47 Thu Feb 16 16:12:32 2017 -0800
    Adding news for keyboard shortcuts, refs #18803
• src/hg/htdocs/mirror.html
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    8eb2e49f870c0c8e633ba2be209d75bc4f1f2853 Wed Feb 15 08:53:25 2017 -0800
    Adding class gbsWarnText to a few more spots mentioning the mailing list, refs #18774
• src/hg/htdocs/staff.html
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    3a9ce6d9d2d72ce6acc98787076570c6b24edf0d Fri Feb 17 12:53:50 2017 -0800
    Changing links to old genomics institute site to new site, refs #14220
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    22c4e662e5f9c7cdbaae439fefa3918199603e9b Mon Feb 13 10:15:59 2017 -0800
    Add class for red warning text. refs #18774
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    4c4cd6680f07f283b49cb18f31e776fe3ef890a9 Mon Feb 13 10:41:12 2017 -0800
    1. Fix donate button sizing on IE11. 2. Add a class for warning text. refs #18744
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    6c09c479d11131f2b081f3b7e039b20b9f1060d8 Mon Feb 13 13:32:06 2017 -0800
    Style 'hr' tag. refs *18744
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    f1c942ab74e88f855e2b7993915b992542428f21 Mon Feb 13 13:51:03 2017 -0800
    Change color of h3 to distinguish from pre. Donnak request. refs #18744
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    8d959c9075d6edbf1fe7092ff16a8abd358812f5 Mon Feb 13 13:52:17 2017 -0800
    Tweak class name for consistency w/ browser. refs #18744
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    92715d8fbe947d17d928d87d5a00ae5aa747f378 Sat Feb 18 17:33:42 2017 -0800
    dropped korea, nyc workshops. added eshg. fixed some lines for code readability
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    aa678b38aba6018d9d0738c8045feae39fc484f9 Sat Feb 18 17:52:20 2017 -0800
    added RNA-seq meeting
• src/hg/inc/bigBedFind.h
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    64f10b4687eae05cf0f5ce9986b40c164d6ea8bc Tue Feb 14 11:31:03 2017 -0800
    add description to searchTrix results refs #13673
• src/hg/inc/cartDb.h
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    e078d7657a37144198bcc0320d527655e1a60689 Mon Feb 13 16:18:41 2017 -0800
    oops, should have yanked this .h definition. It exists in htmshell.h now instead.
• src/hg/inc/versionInfo.h
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    48727b3128e7d2a5a6bd0c01b74dcac357d1e45d Mon Feb 20 12:32:11 2017 -0800
    New version number v345
• src/hg/lib/bigBedFind.c
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    64f10b4687eae05cf0f5ce9986b40c164d6ea8bc Tue Feb 14 11:31:03 2017 -0800
    add description to searchTrix results refs #13673
• src/hg/lib/cart.c
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    c185c5bbae11a20d912e82f544dfe6f5ef5818bf Mon Feb 13 15:41:54 2017 -0800
    Giving function better name. CSP changes. Review feedback. refs #18737
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    5c060e59f4dfaaef7d80080266ed0784c7b1aa82 Mon Feb 13 15:55:34 2017 -0800
    using makeRandomKey in cart.c, removed redundant copy in cartDb.c. code review feedback. refs #18737
• src/hg/lib/cartDb.c
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    5c060e59f4dfaaef7d80080266ed0784c7b1aa82 Mon Feb 13 15:55:34 2017 -0800
    using makeRandomKey in cart.c, removed redundant copy in cartDb.c. code review feedback. refs #18737
• src/hg/lib/fileUi.c
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    313531099a6e334521a493a0fa296b1738ee93a7 Wed Feb 15 15:18:59 2017 -0800
    Trying to make sure that js blocks end with a newline, and often a semi-colon before that. This causes trouble for short fragments of js that used to be able to skate by without it. Now that they are joined into larger blocks of js, the proper puncutation is required. refs #18538
• src/hg/lib/gtexUi.c
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    f592c99e736fe5444dab661ef9ce970feb4cda41 Mon Feb 13 15:42:11 2017 -0800
    Fix problem with view limits entry box introduced when code was refactored in Nov before release.
• src/hg/lib/hgFind.c
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    64f10b4687eae05cf0f5ce9986b40c164d6ea8bc Tue Feb 14 11:31:03 2017 -0800
    add description to searchTrix results refs #13673
• src/hg/lib/hui.c
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    a2fbae6e90d06cb308aa2e050cd8f77c60c6cc96 Mon Feb 13 14:38:47 2017 -0800
    Oops. fixing accidentally messed up indentation. refs #18737
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    c185c5bbae11a20d912e82f544dfe6f5ef5818bf Mon Feb 13 15:41:54 2017 -0800
    Giving function better name. CSP changes. Review feedback. refs #18737
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    df6193cf70930acac4b40670a6b3017b3fd7344e Mon Feb 13 16:06:23 2017 -0800
    code cleanup.
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    313531099a6e334521a493a0fa296b1738ee93a7 Wed Feb 15 15:18:59 2017 -0800
    Trying to make sure that js blocks end with a newline, and often a semi-colon before that. This causes trouble for short fragments of js that used to be able to skate by without it. Now that they are joined into larger blocks of js, the proper puncutation is required. refs #18538
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    776a6d9ae8ccc05256a1e1d25b2eaad6cfd3af12 Thu Feb 16 16:44:32 2017 -0800
    fix problem with composites and the new label regime
• src/hg/lib/jWestBanner.html
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    983c57a31c9479ba5fd76f3a732ef44d414d5a7e Mon Feb 13 13:12:27 2017 -0800
    oops reversing accidental conflict resolution mistake.
• src/hg/lib/jksql.c
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    33b95577fc33857345402b4462ce5e094207b24a Mon Feb 13 16:09:21 2017 -0800
    code cleanup.
• src/hg/lib/jsHelper.c
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    313531099a6e334521a493a0fa296b1738ee93a7 Wed Feb 15 15:18:59 2017 -0800
    Trying to make sure that js blocks end with a newline, and often a semi-colon before that. This causes trouble for short fragments of js that used to be able to skate by without it. Now that they are joined into larger blocks of js, the proper puncutation is required. refs #18538
• src/hg/lib/trackDbCustom.c
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    776a6d9ae8ccc05256a1e1d25b2eaad6cfd3af12 Thu Feb 16 16:44:32 2017 -0800
    fix problem with composites and the new label regime
• src/hg/lib/trackHub.c
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    64f10b4687eae05cf0f5ce9986b40c164d6ea8bc Tue Feb 14 11:31:03 2017 -0800
    add description to searchTrix results refs #13673
• src/hg/makeDb/doc/danRer10/lastzRuns.txt
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    23e1c4a463e672e3c3072dae7c05ccf9c6747522 Mon Feb 13 10:07:56 2017 -0800
    lastz/chain/net runs per user request and catch up with danRer7 refs #18809
• src/hg/makeDb/schema/all.joiner
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    9d1948772e86496437d410569c54f5f4a75a3ac2 Sun Feb 19 14:28:10 2017 -0800
    adding colAng rules refs #17545
• src/hg/makeDb/trackDb/human/hg17/encodeMavidCons.html
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    9372c4f00b7fa32ac3a33e9003f498b352099373 Fri Feb 17 12:56:32 2017 -0800
    Changing links to old genomics institute site to new site for track description pages, refs #14220
• src/hg/makeDb/trackDb/human/hg17/encodeMavidElements.html
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    9372c4f00b7fa32ac3a33e9003f498b352099373 Fri Feb 17 12:56:32 2017 -0800
    Changing links to old genomics institute site to new site for track description pages, refs #14220
• src/hg/makeDb/trackDb/human/hg17/encodeMlaganCons.html
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    9372c4f00b7fa32ac3a33e9003f498b352099373 Fri Feb 17 12:56:32 2017 -0800
    Changing links to old genomics institute site to new site for track description pages, refs #14220
• src/hg/makeDb/trackDb/human/hg17/encodeMlaganElements.html
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    9372c4f00b7fa32ac3a33e9003f498b352099373 Fri Feb 17 12:56:32 2017 -0800
    Changing links to old genomics institute site to new site for track description pages, refs #14220
• src/hg/makeDb/trackDb/human/hg17/encodeMsaElements.html
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    9372c4f00b7fa32ac3a33e9003f498b352099373 Fri Feb 17 12:56:32 2017 -0800
    Changing links to old genomics institute site to new site for track description pages, refs #14220
• src/hg/makeDb/trackDb/human/hg17/encodeTbaCons.html
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    9372c4f00b7fa32ac3a33e9003f498b352099373 Fri Feb 17 12:56:32 2017 -0800
    Changing links to old genomics institute site to new site for track description pages, refs #14220
• src/hg/makeDb/trackDb/human/hg17/encodeTbaElements.html
  • lines changed 1, context: html, text, full: html, text
    9372c4f00b7fa32ac3a33e9003f498b352099373 Fri Feb 17 12:56:32 2017 -0800
    Changing links to old genomics institute site to new site for track description pages, refs #14220
• src/hg/makeDb/trackDb/human/hg38/hg38Patch9.ra
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    6ed1985ae4003f8d5fec6ee5fa11be7bc27f8916 Fri Feb 17 14:49:11 2017 -0800
    update search rules to include KV items refs #18274
• src/hg/makeDb/trackDb/human/hg38/trackDb.ra
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    4eec29fffd298603f97760e657f686ecfb640009 Fri Feb 17 14:40:36 2017 -0800
    Correcting mistake in ncbiRefSeqCurated search rule, refs #13673
• src/hg/makeDb/trackDb/mouse/mm10/strainSNPs.html
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    4098be5697f61c73945acf9e079b2b02a613d1e7 Wed Feb 15 14:05:37 2017 -0800
    updated with information from Sanger README refs #13553
• src/hg/makeDb/trackDb/refSeqComposite.html
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    52e3b3f711c7a7e53fc50c1f9d1d82c2ba2f729d Tue Feb 14 11:09:29 2017 -0800
    Adding data access section to track desc. page. Other minor desc. page edits for consistency and clarification. Changed color of ncbiRefSeqPsl track to black. Turned off UCSC RefSeq track by default and turned on RefSeq Curated per Jim's feedback. refs #13673
• src/hg/makeDb/trackDb/refSeqComposite.ra
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    52e3b3f711c7a7e53fc50c1f9d1d82c2ba2f729d Tue Feb 14 11:09:29 2017 -0800
    Adding data access section to track desc. page. Other minor desc. page edits for consistency and clarification. Changed color of ncbiRefSeqPsl track to black. Turned off UCSC RefSeq track by default and turned on RefSeq Curated per Jim's feedback. refs #13673
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    847c85ef98b6acd65bd5e5f90dfbc7db94e6014c Tue Feb 14 11:40:05 2017 -0800
    reload ncbiRefSeqOther table as a bigBed 12+ with indexes refs #13673
• src/hg/makeDb/trackDb/trackDb.transMap.ra
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    e4cf75bb701b40a808bc07fc23e1cd66049c6533 Tue Feb 14 12:36:10 2017 -0800
    Adding canPack setting to all transmap v4 track, refs #18818
• src/hg/utils/phyloTrees/refSeq/taxId.commonName.vertebrates.tsv
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    1347274a20a639548c619c25239f7d9a34b1180e Sun Feb 19 14:26:18 2017 -0800
    catching up primate and mammal names refs #18785
• src/hg/visiGene/hgVisiGene/hgVisiGene.c
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    313531099a6e334521a493a0fa296b1738ee93a7 Wed Feb 15 15:18:59 2017 -0800
    Trying to make sure that js blocks end with a newline, and often a semi-colon before that. This causes trouble for short fragments of js that used to be able to skate by without it. Now that they are joined into larger blocks of js, the proper puncutation is required. refs #18538
• src/inc/cheapcgi.h
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    c185c5bbae11a20d912e82f544dfe6f5ef5818bf Mon Feb 13 15:41:54 2017 -0800
    Giving function better name. CSP changes. Review feedback. refs #18737
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    bcbb8d33a61ae54020a12b2b34113a34c933eb29 Tue Feb 14 23:00:00 2017 -0800
    Adding convenience var arg functions jsInlineF and jsOnEventByIdF, suggested by Angie.
• src/inc/common.h
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    64f10b4687eae05cf0f5ce9986b40c164d6ea8bc Tue Feb 14 11:31:03 2017 -0800
    add description to searchTrix results refs #13673
• src/inc/dystring.h
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    bcbb8d33a61ae54020a12b2b34113a34c933eb29 Tue Feb 14 23:00:00 2017 -0800
    Adding convenience var arg functions jsInlineF and jsOnEventByIdF, suggested by Angie.
• src/inc/htmshell.h
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    5c060e59f4dfaaef7d80080266ed0784c7b1aa82 Mon Feb 13 15:55:34 2017 -0800
    using makeRandomKey in cart.c, removed redundant copy in cartDb.c. code review feedback. refs #18737
• src/lib/cheapcgi.c
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    c185c5bbae11a20d912e82f544dfe6f5ef5818bf Mon Feb 13 15:41:54 2017 -0800
    Giving function better name. CSP changes. Review feedback. refs #18737
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    bcbb8d33a61ae54020a12b2b34113a34c933eb29 Tue Feb 14 23:00:00 2017 -0800
    Adding convenience var arg functions jsInlineF and jsOnEventByIdF, suggested by Angie.
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    733819dd56c3d6d3b945236e0c3a06633f6484e3 Wed Feb 15 22:41:29 2017 -0800
    CSP - adding name as id for cgiMakeButton. Adding event parameter to event function so it will be available to functions that need it. refs #18538
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    50b2e5f80ed6f564a694e5909a56f45cfc194dee Thu Feb 16 11:32:29 2017 -0800
    For backwards compatibility with event param in IE. refs #18538
• src/lib/common.c
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    64f10b4687eae05cf0f5ce9986b40c164d6ea8bc Tue Feb 14 11:31:03 2017 -0800
    add description to searchTrix results refs #13673
• src/lib/htmshell.c
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    5c060e59f4dfaaef7d80080266ed0784c7b1aa82 Mon Feb 13 15:55:34 2017 -0800
    using makeRandomKey in cart.c, removed redundant copy in cartDb.c. code review feedback. refs #18737
• src/utils/bedToBigBed/bedToBigBed.c
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    2ef410be2ff11ae67d6f43dcc363d1c4bb194a53 Wed Feb 15 14:47:38 2017 -0800
    write out the zoomLevel information in bigBed headers.
• src/utils/qa/qaGbTracks
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    36a49772a10673662471b7b1edc2e1744006a466 Wed Feb 15 09:48:59 2017 -0800
    Tweaking usage message to mention runBits.csh. Adding main function to qaGbTracks. no redmine
• src/utils/qa/weeklybld/buildEnv.csh
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    ad609201a238fbd0ed1e35c5b44821ff0e6c7252 Mon Feb 13 09:57:46 2017 -0800
    v345 preview2 refs #18789
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    2a845757c055ca212837c8a7be67a5aa7e96b793 Mon Feb 20 12:31:24 2017 -0800
    v345 final build refs #18789

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• files changed: 190