Commits for braney

v344_base to v345_preview (2017-01-30 to 2017-02-06) v345

970e80c7e8c82afd34071be3b5dda6cdb440691b Mon Jan 30 11:41:33 2017 -0800

• add some doc about halSnake in trackDb
  • src/hg/htdocs/goldenPath/help/trackDb/trackDbHub.v2.html - lines changed 22, context: html, text, full: html, text
  • src/hg/htdocs/goldenPath/help/trackDb/trackDbLibrary.shtml - lines changed 34, context: html, text, full: html, text

54c169c4625a0592c737853f2c7907b619cfe11d Mon Jan 30 11:43:28 2017 -0800

• add note to mm10 ucsc genes doc to use new method to build Pfam tables
  • src/hg/makeDb/doc/ucscGenes/mm10.ucscGenes16.csh - lines changed 1, context: html, text, full: html, text

0d6f83aa38e1a6ee04952a36ce1e03e8591199c5 Tue Jan 31 12:32:39 2017 -0800

• turn on indel and query gap annotation for BLAT custom tracks
  • src/hg/hgBlat/hgBlat.c - lines changed 1, context: html, text, full: html, text

1ba22c3fff694d48c7a81e28030820694ec05a25 Tue Jan 31 15:20:35 2017 -0800

• fix a bug with bigGenePred's not paying attention to itemRgb
  • src/hg/hgTracks/simpleTracks.c - lines changed 2, context: html, text, full: html, text

534feaa0bd15fe67eafcc900ebecbd44ad0e74a7 Tue Jan 31 15:35:00 2017 -0800

• with snakes, get other db name from otherSpecies, not from track name
  • src/hg/hgc/hgc.c - lines changed 4, context: html, text, full: html, text

431ca2b29dd35a0ebd83029e95bca9363022a037 Tue Jan 31 17:33:19 2017 -0800

• fix some problems with long chrom names and the cyto band track
  • src/hg/hgTracks/hgTracks.c - lines changed 3, context: html, text, full: html, text
  • src/hg/lib/hCytoBand.c - lines changed 4, context: html, text, full: html, text

5be304c4bdd41bd4452a4b9f1b8fcf37930079e4 Fri Feb 3 11:09:59 2017 -0800

• allow arbitrary fields with a bigBed file to be used for labels. #18782
  • src/hg/hgTracks/bedTrack.c - lines changed 51, context: html, text, full: html, text
  • src/hg/hgTracks/bigBedTrack.c - lines changed 38, context: html, text, full: html, text
  • src/hg/hgTracks/hgTracks.h - lines changed 12, context: html, text, full: html, text
  • src/hg/hgTracks/simpleTracks.c - lines changed 1, context: html, text, full: html, text
  • src/hg/inc/hui.h - lines changed 4, context: html, text, full: html, text
  • src/hg/inc/trackDb.h - lines changed 1, context: html, text, full: html, text
  • src/hg/lib/hui.c - lines changed 31, context: html, text, full: html, text
  • src/hg/lib/trackDbCustom.c - lines changed 2, context: html, text, full: html, text
  • src/inc/basicBed.h - lines changed 1, context: html, text, full: html, text

d2698ab46be18b70983ab1bd3121d01cd818389a Fri Feb 3 14:53:49 2017 -0800

• oops fixed a problem with bed scores
  • src/hg/inc/trackDb.h - lines changed 1, context: html, text, full: html, text
  • src/hg/lib/hui.c - lines changed 5, context: html, text, full: html, text
  • src/hg/lib/trackDbCustom.c - lines changed 2, context: html, text, full: html, text

aafec239883e640f1587941d72e2204673366aa3 Fri Feb 3 16:05:28 2017 -0800

• some doc for labelFields
  • src/hg/htdocs/goldenPath/help/trackDb/trackDbHub.v2.html - lines changed 9, context: html, text, full: html, text
  • src/hg/htdocs/goldenPath/help/trackDb/trackDbLibrary.shtml - lines changed 6, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/tagTypes.tab - lines changed 1, context: html, text, full: html, text

13598ccea89fe2434ea2be5aa8b9077619ceabe4 Sat Feb 4 08:44:35 2017 -0800

• fix some problems with big* labels
  • src/hg/hgTracks/bedTrack.c - lines changed 6, context: html, text, full: html, text
  • src/hg/lib/hui.c - lines changed 8, context: html, text, full: html, text