47d627a3ae7adefee58bf78255521416efcb470f mspeir Fri Feb 3 10:19:18 2017 -0800 Minor rewording based on CR, refs #18674 diff --git src/hg/lib/genePredExt.as src/hg/lib/genePredExt.as index 7f4541d..f6321ac 100644 --- src/hg/lib/genePredExt.as +++ src/hg/lib/genePredExt.as @@ -1,20 +1,20 @@ table genePredExt "A gene prediction with some additional info." ( string name; "Name of gene (usually transcript_id from GTF)" string chrom; "Reference sequence chromosome or scaffold" char[1] strand; "+ or - for strand" - uint txStart; "Transcription start position (or transcription end position if item is on minus strand)" - uint txEnd; "Transcription end position (or transcription start position if item is on minus strand)" - uint cdsStart; "Coding region start (or coding end position if item is on minus strand)" - uint cdsEnd; "Coding region end (or coding start position if item is on minus strand)" + uint txStart; "Transcription start position (or end position for minus strand item)" + uint txEnd; "Transcription end position (or start position for minus strand item)" + uint cdsStart; "Coding region start (or end position for minus strand item)" + uint cdsEnd; "Coding region end (or start position for minus strand item)" uint exonCount; "Number of exons" - uint[exonCount] exonStarts; "Exon start positions (or exon end positions if item is on minus strand)" - uint[exonCount] exonEnds; "Exon end positions (or exon start positions if item is on minus strand)" + uint[exonCount] exonStarts; "Exon start positions (or end positions for minus strand item)" + uint[exonCount] exonEnds; "Exon end positions (or start positions for minus strand item)" uint score; "score" string name2; "Alternate name (e.g. gene_id from GTF)" string cdsStartStat; "enum('none','unk','incmpl','cmpl')" string cdsEndStat; "enum('none','unk','incmpl','cmpl')" int[exonCount] exonFrames; "Exon frame {0,1,2}, or -1 if no frame for exon" )