f48d6722539eedb842d629cb7c8681ad88e1b685 donnak Wed Dec 28 23:39:25 2016 -0800 First pass at migration to new style sheet. Refs #18504 diff --git src/hg/htdocs/util.html src/hg/htdocs/util.html index 7903b55..256f6f7 100755 --- src/hg/htdocs/util.html +++ src/hg/htdocs/util.html @@ -1,104 +1,37 @@ -<!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 3.2//EN"> -<HTML> -<HEAD> - <META HTTP-EQUIV="Content-Type" CONTENT="text/html;CHARSET=iso-8859-1"> - <TITLE>UCSC Genome Browser: Utilities</TITLE> - <LINK REL="STYLESHEET" HREF="style/HGStyle.css"> -</HEAD> -<BODY BGCOLOR="FFF9D2" LINK="0000CC" VLINK="#330066" ALINK="#330066"> -<A NAME="TOP"></A> +<!DOCTYPE html> +<!--#set var="TITLE" value="UCSC Genome Browser: Utilities" --> +<!--#include virtual="/gbPageStart.html"--> + +<h1>UCSC Genome Browser Utilities</h1> +<p> +The following tools and utilities created by the UCSC Genome Bioinformatics Group are availble for +public use:</p> +<ul> + <li> + <a href="cgi-bin/hgLiftOver">Batch Coordinate Conversion (liftOver)</a> - converts genome + coordinates and genome annotation files between assemblies. The current version supports both + forward and reverse conversions, as well as conversions between selected species.</li> + <li> + <a href="http://users.soe.ucsc.edu/~kent/dnaDust/dnadust.html">DNA Duster</a> - removes formatting + characters and other non-sequence-related characters from an input sequence. Offers several + configuration options for the output format, including translated protein. </li> + <li> + <a href="http://users.soe.ucsc.edu/~kent/protDust/protDust.html">Protein Duster</a> - removes + formatting characters and other non-sequence-related characters from an input sequence. Offers + several configuration options for the output format. </li> + <li> + <a href="cgi-bin/phyloPng">Phylogenetic Tree PNG Maker</a> - creates a PNG image from the + phylogenetic tree specification given. Offers several configuration options for branch lengths, + normalized lengths, branch labels, legend etc.</li> + <li> + <a href="http://hgdownload.cse.ucsc.edu/downloads.html#source_downloads">Executable and Source + Code Downloads</a> - executable and source code downloads of the Genome Browser, Blat and + liftOver. </li> +</ul> -<TABLE BORDER=0 CELLPADDING=0 CELLSPACING=0 WIDTH="100%"><TR><TH COLSPAN=2 ALIGN="left"><IMG SRC="images/title.jpg"></TH></TR> - -<TR><TD COLSPAN=2 HEIGHT=40><!--#include virtual="./cgi-bin/hgMenubar"--></TD></TR> -<!--Content Tables-------------------------------------------------------> - <TR><TD COLSPAN=2 CELLPADDING=10> - <!--outer table is for border purposes--> - <TABLE WIDTH="100%" BGCOLOR="#888888" BORDER="0" CELLSPACING="0" CELLPADDING="1"> - <TR><TD> - <TABLE BGCOLOR="fffee8" WIDTH="100%" BORDER="0" CELLSPACING="0" CELLPADDING="0"> - <TR><TD> - <TABLE BGCOLOR="D9E4F8" BACKGROUND="images/hr.gif" WIDTH=100%> - <TR><TD> - <FONT SIZE="4"><b> UCSC Genome Browser Utilities</b></FONT> - </TD></TR> - </TABLE> - <TABLE BGCOLOR="fffee8" WIDTH="100%" CELLPADDING=0> - <TR><TH HEIGHT=10></TH></TR> - <TR><TD WIDTH=10> </TD> - <TD> - <P> - This page contains links to tools and utilities - created by the UCSC Genome Bioinformatics Group. - <P> - <UL> - <LI><A HREF="cgi-bin/hgLiftOver">Batch Coordinate Conversion (liftOver)</A> - - converts genome coordinates and genome annotation - files between assemblies. The current version - supports both forward and reverse conversions, - as well as conversions between selected - species. - - <LI><A HREF="http://users.soe.ucsc.edu/~kent/dnaDust/dnadust.html">DNA Duster</A> - - removes formatting characters and other - non-sequence-related characters from an input - sequence. Offers several configuration options - for the output format, including translated - protein. - - - <LI><A HREF="http://users.soe.ucsc.edu/~kent/protDust/protDust.html">Protein Duster</A> - - removes formatting characters and other - non-sequence-related characters from an input - sequence. Offers several configuration options - for the output format. - - <LI><A HREF="cgi-bin/phyloPng">Phylogenetic Tree - PNG Maker</A> - creates a PNG image from the - phylogenetic tree specification given. - Offers several configuration options for branch - lengths, normalized lengths, branch labels, - legend etc. - - <LI><A HREF="http://hgdownload.cse.ucsc.edu/downloads.html#source_downloads">Executable and Source Code Downloads</A> - - executable and source code downloads of the Genome Browser, - Blat and liftOver. - </UL> - </TD> - <TD WIDTH=15></TD> - </TR> - </TABLE> - <BR> - </TD></TR> - </TABLE> - </TD></TR> - </TABLE> - -<!--Content Tables-------------------------------------------------------> <!--Commented out until training materials are available - <TR><TD COLSPAN=2 CELLPADDING=10> - <TABLE WIDTH="100%" BGCOLOR="#888888" BORDER="0" CELLSPACING="0" CELLPADDING="1"> - <TR><TD> - <TABLE BGCOLOR="fffee8" WIDTH="100%" BORDER="0" CELLSPACING="0" CELLPADDING="0"> - <TR><TD> - <TABLE BGCOLOR="D9E4F8" BACKGROUND="images/hr.gif" WIDTH=100%> - <TR><TD> - <FONT SIZE="3"><b> UCSC Genome Browser Educational Materials</b></FONT> - </TD></TR> - </TABLE> - <TABLE BGCOLOR="fffee8" WIDTH="100%" CELLPADDING=0> - <TR><TH HEIGHT=10></TH></TR> - <TR><TD WIDTH=10> </TD><TD> - <P> - </TD> - <TD WIDTH=15></TD> - </TR></TABLE> - <br></TD></TR> - </TABLE> - </TD></TR> - </TABLE> +<h2>UCSC Genome Browser Educational Materials</h2> --> - </TD></TR> -</TABLE> -</BODY></HTML> + +<!--#include virtual="/gbPageEnd.html"-->