05a4f0aef0d087b201bb37fc85357e1e745f1ce3 hiram Mon Mar 6 13:17:10 2017 -0800 up to date with new assemblies colAng1 rhiBie1 macNem1 updated taxId for tarSyr2 caeSp51 diff --git src/hg/js/dbDbTaxonomy.js src/hg/js/dbDbTaxonomy.js index 037e7ed..de2feb2 100644 --- src/hg/js/dbDbTaxonomy.js +++ src/hg/js/dbDbTaxonomy.js @@ -7,164 +7,173 @@ [ ["Eumetazoa", 6072, null, [ ["Bilateria", 33213, null, [ ["Deuterostomia", 33511, null, [ ["Chordata", 7711, null, [ ["Craniata", 89593, null, [ ["Vertebrata", 7742, null, [ ["Gnathostomata", 7776, null, [ ["Teleostomi", 117570, null, [ ["Euteleostomi", 117571, null, [ ["Sarcopterygii", 8287, null, [ ["Dipnotetrapodomorpha", 1338369, null, [ ["Tetrapoda", 32523, null, [ ["Amniota", 32524, null, [ ["Mammalia", 40674, null, [ ["Theria", 32525, null, - [ ["Eutheria", 9347, "Eutheria", + [ ["Eutheria", 9347, null, [ ["Boreoeutheria", 1437010, null, - [ ["Euarchontoglires", 314146, "Euarchontoglires", + [ ["Euarchontoglires", 314146, null, [ ["Primate", 9443, "Primates", [ ["Haplorrhini", 376913, null, [ ["Simiiformes", 314293, null, - [ ["Catarrhini", 9526, "Catarrhini", + [ ["Catarrhini", 9526, null, [ ["Hominoidea", 314295, null, [ ["Hominidae", 9604, "Hominidae", [ ["Homininae", 207598, null, [ ["Homo", 9605, null, [ ["Human", 9606, "Homo sapiens" ] ] ], ["Pan", 9596, null, [ ["Chimp", 9598, "Pan troglodytes" ], ["Bonobo", 9597, "Pan paniscus" ] ] ], ["Gorilla", 9592, null, [ ["Gorilla gorilla", 9593, null, [ ["Gorilla", 9595, "Gorilla gorilla gorilla" ] ] ] ] ] ] ], ["Ponginae", 607660, null, [ ["Pongo", 9599, null, [ ["Orangutan", 9601, "Pongo abelii" ] ] ] ] ] ] ], ["Hylobatidae", 9577, null, [ ["Nomascus", 325165, null, [ ["Gibbon", 61853, "Nomascus leucogenys" ] ] ] ] ] ] ], ["Cercopithecoidea", 314294, null, [ ["Cercopithecidae", 9527, null, [ ["Cercopithecinae", 9528, null, [ ["Chlorocebus", 392815, null, [ ["Green monkey", 60711, "Chlorocebus sabaeus" ] ] ], ["Macaca", 9539, null, [ ["Crab-eating macaque", 9541, "Macaca fascicularis" ], + ["Pig-tailed macaque", 9545, "Macaca nemestrina" ], ["Rhesus", 9544, "Macaca mulatta" ] ] ], ["Papio", 9554, null, [ ["Baboon (anubis)", 9555, "Papio anubis" ], ["Papio hamadryas", 9557, null, [ ["Baboon (hamadryas)", 9562, "Papio hamadryas hamadryas" ] ] ] ] ] ] ], ["Colobinae", 9569, null, - [ ["Nasalis", 43779, null, + [ ["Colobus", 9570, null, + [ ["Colobus angolensis", 54131, null, + [ ["Angolan colobus", 336983, "Colobus angolensis palliatus" ] ] ] ] ], + ["Nasalis", 43779, null, [ ["Proboscis monkey", 43780, "Nasalis larvatus" ] ] ], ["Rhinopithecus", 542827, null, - [ ["Golden snub-nosed monkey", 61622, "Rhinopithecus roxellana" ] ] ] ] ] ] ] ] ] ] ], + [ ["Black snub-nosed monkey", 61621, "Rhinopithecus bieti" ], + ["Golden snub-nosed monkey", 61622, "Rhinopithecus roxellana" ] ] ] ] ] ] ] ] ] ] ], ["Platyrrhini", 9479, null, [ ["Cebidae", 9498, null, [ ["Callitrichinae", 9480, null, [ ["Callithrix", 9481, null, - [ ["Marmoset", 9483, "Callithrix jacchus" ] ] ] ] ], + [ ["Callithrix", 1965096, null, + [ ["Marmoset", 9483, "Callithrix jacchus" ] ] ] ] ] ] ], ["Saimiriinae", 378850, null, [ ["Saimiri", 9520, null, [ ["Saimiri boliviensis", 27679, null, [ ["Squirrel monkey", 39432, "Saimiri boliviensis boliviensis" ] ] ] ] ] ] ] ] ] ] ] ] ], ["Tarsiiformes", 376912, null, [ ["Tarsiidae", 9475, null, - [ ["Tarsius", 9476, null, - [ ["Tarsier", 9478, "Tarsius syrichta" ] ] ] ] ] ] ] ] ], + [ ["Carlito", 1868481, null, + [ ["Tarsier", 1868482, "Carlito syrichta" ] ] ] ] ] ] ] ] ], ["Strepsirrhini", 376911, null, [ ["Lemuriformes", 376915, null, [ ["Cheirogaleidae", 30615, null, [ ["Microcebus", 13149, null, [ ["Mouse lemur", 30608, "Microcebus murinus" ] ] ] ] ] ] ], ["Lorisiformes", 376917, null, [ ["Galagidae", 40297, null, [ ["Otolemur", 30610, null, [ ["Bushbaby", 30611, "Otolemur garnettii" ] ] ] ] ] ] ] ] ] ] ], - ["Glires", 314147, "Glires", + ["Glires", 314147, null, [ ["Rodentia", 9989, null, - [ ["Sciurognathi", 33553, null, + [ ["Myomorpha", 1963758, null, [ ["Muroidea", 337687, null, [ ["Muridae", 10066, null, [ ["Murinae", 39107, null, [ ["Mus", 10088, null, [ ["Mus", 862507, null, [ ["Mouse", 10090, "Mus musculus" ] ] ] ] ], ["Rattus", 10114, null, [ ["Rat", 10116, "Rattus norvegicus" ] ] ] ] ] ] ], ["Cricetidae", 337677, null, [ ["Arvicolinae", 39087, null, [ ["Microtus", 10053, null, [ ["Prairie vole", 79684, "Microtus ochrogaster" ] ] ] ] ], ["Cricetinae", 10026, null, [ ["Cricetulus", 10028, null, [ ["Chinese hamster", 10029, "Cricetulus griseus" ] ] ], ["Mesocricetus", 10035, null, [ ["Golden hamster", 10036, "Mesocricetus auratus" ] ] ] ] ], ["Neotominae", 337963, null, [ ["Peromyscus", 10040, null, [ ["Peromyscus maniculatus", 10042, null, [ ["Prairie deer mouse", 230844, "Peromyscus maniculatus bairdii" ] ] ] ] ] ] ] ] ], ["Spalacidae", 337664, null, [ ["Spalacinae", 10061, null, [ ["Nannospalax", 30636, null, [ ["Upper Galilee mountains blind mole rat", 1026970, "Nannospalax galili" ] ] ] ] ] ] ] ] ], - ["Dipodidae", 30648, null, + ["Dipodoidea", 1963761, null, + [ ["Dipodidae", 30648, null, [ ["Dipodinae", 35737, null, [ ["Jaculus", 48867, null, - [ ["Lesser Egyptian jerboa", 51337, "Jaculus jaculus" ] ] ] ] ] ] ], - ["Heteromyidae", 10015, null, + [ ["Lesser Egyptian jerboa", 51337, "Jaculus jaculus" ] ] ] ] ] ] ] ] ] ] ], + ["Castorimorpha", 1963757, null, + [ ["Heteromyidae", 10015, null, [ ["Dipodomyinae", 38662, null, [ ["Dipodomys", 10016, null, - [ ["Kangaroo rat", 10020, "Dipodomys ordii" ] ] ] ] ] ] ], - ["Sciuridae", 55153, null, - [ ["Xerinae", 337726, null, - [ ["Marmotini", 337730, null, - [ ["Ictidomys", 1141640, null, - [ ["Squirrel", 43179, "Ictidomys tridecemlineatus" ] ] ] ] ] ] ] ] ] ] ], - ["Hystricognathi", 33550, null, + [ ["Kangaroo rat", 10020, "Dipodomys ordii" ] ] ] ] ] ] ] ] ], + ["Hystricomorpha", 33550, null, [ ["Bathyergidae", 10167, null, [ ["Heterocephalus", 10180, null, [ ["Naked mole-rat", 10181, "Heterocephalus glaber" ] ] ] ] ], ["Caviidae", 10139, null, [ ["Cavia", 10140, null, [ ["Guinea pig", 10141, "Cavia porcellus" ] ] ] ] ], ["Chinchillidae", 10150, null, [ ["Chinchilla", 10151, null, [ ["Chinchilla", 34839, "Chinchilla lanigera" ] ] ] ] ], ["Octodontidae", 10158, null, [ ["Octodon", 10159, null, - [ ["Brush-tailed rat", 10160, "Octodon degus" ] ] ] ] ] ] ] ] ], + [ ["Brush-tailed rat", 10160, "Octodon degus" ] ] ] ] ] ] ], + ["Sciuromorpha", 33553, null, + [ ["Sciuridae", 55153, null, + [ ["Xerinae", 337726, null, + [ ["Marmotini", 337730, null, + [ ["Ictidomys", 1141640, null, + [ ["Squirrel", 43179, "Ictidomys tridecemlineatus" ] ] ] ] ] ] ] ] ] ] ] ] ], ["Lagomorpha", 9975, null, [ ["Leporidae", 9979, null, [ ["Oryctolagus", 9984, null, [ ["Rabbit", 9986, "Oryctolagus cuniculus" ] ] ] ] ], ["Ochotonidae", 9976, null, [ ["Ochotona", 9977, null, [ ["Pika", 9978, "Ochotona princeps" ] ] ] ] ] ] ] ] ], ["Dermoptera", 30656, null, [ ["Cynocephalidae", 30657, null, [ ["Galeopterus", 482536, null, [ ["Malayan flying lemur", 482537, "Galeopterus variegatus" ] ] ] ] ] ] ], ["Scandentia", 9392, null, [ ["Tupaiidae", 9393, null, [ ["Tupaia", 9394, null, [ ["Chinese tree shrew", 246437, "Tupaia chinensis" ], ["Tree shrew", 37347, "Tupaia belangeri" ] ] ] ] ] ] ] ] ], - ["Laurasiatheria", 314145, "Laurasiatheria", + ["Laurasiatheria", 314145, null, [ ["Insectivora", 9362, null, [ ["Erinaceidae", 9363, null, [ ["Erinaceinae", 30577, null, [ ["Erinaceus", 9364, null, [ ["Hedgehog", 9365, "Erinaceus europaeus" ] ] ] ] ] ] ], ["Soricidae", 9376, null, [ ["Soricinae", 183663, null, [ ["Sorex", 9379, null, [ ["Shrew", 42254, "Sorex araneus" ] ] ] ] ] ] ], ["Talpidae", 9373, null, [ ["Condylura", 143301, null, [ ["Star-nosed mole", 143302, "Condylura cristata" ] ] ] ] ] ] ], ["Cetartiodactyla", 91561, null, [ ["Suina", 35497, null, [ ["Suidae", 9821, null, @@ -321,32 +330,32 @@ [ ["Orycteropus afer", 9818, null, [ ["Aardvark", 1230840, "Orycteropus afer afer" ] ] ] ] ] ] ] ] ] ] ], ["Xenarthra", 9348, null, [ ["Cingulata", 948951, null, [ ["Dasypodidae", 9359, null, [ ["Dasypus", 9360, null, [ ["Armadillo", 9361, "Dasypus novemcinctus" ] ] ] ] ] ] ], ["Pilosa", 948950, null, [ ["Folivora", 948953, null, [ ["Megalonychidae", 227508, null, [ ["Choloepus", 9357, null, [ ["Sloth", 9358, "Choloepus hoffmanni" ] ] ] ] ] ] ] ] ] ] ] ] ], ["Metatheria", 9263, null, [ ["Diprotodontia", 38609, null, [ ["Macropodidae", 9307, null, - [ ["Macropus", 9312, null, - [ ["Wallaby", 9315, "Macropus eugenii" ] ] ] ] ] ] ], + [ ["Notamacropus", 1960649, null, + [ ["Wallaby", 9315, "Notamacropus eugenii" ] ] ] ] ] ] ], ["Dasyuromorphia", 38608, null, [ ["Dasyuridae", 9277, null, [ ["Sarcophilus", 9304, null, [ ["Tasmanian devil", 9305, "Sarcophilus harrisii" ] ] ] ] ] ] ], ["Didelphimorphia", 38605, null, [ ["Didelphidae", 9265, null, [ ["Didelphinae", 126287, null, [ ["Monodelphis", 13615, null, [ ["Opossum", 13616, "Monodelphis domestica" ] ] ] ] ] ] ] ] ] ] ] ] ], ["Prototheria", 9254, null, [ ["Monotremata", 9255, null, [ ["Ornithorhynchidae", 9256, null, [ ["Ornithorhynchus", 9257, null, [ ["Platypus", 9258, "Ornithorhynchus anatinus" ] ] ] ] ] ] ] ] ] ] ], ["Sauropsida", 8457, null, @@ -370,33 +379,36 @@ [ ["Turkey", 9103, "Meleagris gallopavo" ] ] ] ] ], ["Perdicinae", 466544, null, [ ["Coturnix", 9090, null, [ ["Japanese quail", 93934, "Coturnix japonica" ] ] ] ] ] ] ] ] ], ["Anseriformes", 8826, null, [ ["Anatidae", 8830, null, [ ["Anas", 8835, null, [ ["Mallard duck", 8839, "Anas platyrhynchos" ] ] ] ] ] ] ] ] ], ["Bucerotiformes", 57379, null, [ ["Bucerotidae", 57380, null, [ ["Buceros", 175829, null, [ ["Buceros rhinoceros", 175835, null, [ ["Rhinoceros hornbill", 175836, "Buceros rhinoceros silvestris" ] ] ] ] ] ] ] ] ], ["Caprimulgiformes", 8902, null, [ ["Caprimulgidae", 48283, null, - [ ["Caprimulginae", 48286, null, - [ ["Caprimulgus", 48284, null, - [ ["Chuck-will's-widow", 279965, "Caprimulgus carolinensis" ] ] ] ] ] ] ] ] ], + [ ["Antrostomus", 1854010, null, + [ ["Chuck-will's-widow", 279965, "Antrostomus carolinensis" ] ] ] ] ] ] ], + ["Cariamiformes", 1956187, null, + [ ["Cariamidae", 54378, null, + [ ["Cariama", 54379, null, + [ ["Red-legged seriema", 54380, "Cariama cristata" ] ] ] ] ] ] ], ["Charadriiformes", 8906, null, [ ["Charadriidae", 8907, null, [ ["Charadrius", 50391, null, [ ["Killdeer", 50402, "Charadrius vociferus" ] ] ] ] ] ] ], ["Ciconiiformes", 8920, null, [ ["Pteroclidae", 56295, null, [ ["Pterocles", 56296, null, [ ["Yellow-throated sandgrouse", 240206, "Pterocles gutturalis" ] ] ] ] ] ] ], ["Coliiformes", 57384, null, [ ["Coliidae", 57385, null, [ ["Colius", 57409, null, [ ["Speckled mousebird", 57412, "Colius striatus" ] ] ] ] ] ] ], ["Columbiformes", 8929, null, [ ["Columbidae", 8930, null, [ ["Columba", 8931, null, @@ -418,34 +430,31 @@ [ ["Aquila", 8960, null, [ ["Aquila chrysaetos", 8962, null, [ ["Golden eagle", 216574, "Aquila chrysaetos canadensis" ] ] ] ] ], ["Haliaeetus", 8968, null, [ ["Bald eagle", 52644, "Haliaeetus leucocephalus" ], ["White-tailed eagle", 8969, "Haliaeetus albicilla" ] ] ] ] ] ] ], ["Falconidae", 8949, null, [ ["Falco", 8952, null, [ ["Peregrine falcon", 8954, "Falco peregrinus" ], ["Saker falcon", 345164, "Falco cherrug" ] ] ] ] ] ] ], ["Gaviiformes", 30411, null, [ ["Gaviidae", 30412, null, [ ["Gavia", 37038, null, [ ["Red-throated loon", 37040, "Gavia stellata" ] ] ] ] ] ] ], ["Gruiformes", 9108, null, - [ ["Cariamidae", 54378, null, - [ ["Cariama", 54379, null, - [ ["Red-legged seriema", 54380, "Cariama cristata" ] ] ] ] ], - ["Eurypygidae", 54381, null, + [ ["Eurypygidae", 54381, null, [ ["Eurypyga", 54382, null, [ ["Sunbittern", 54383, "Eurypyga helias" ] ] ] ] ], ["Gruidae", 9109, null, [ ["Balearica", 30413, null, [ ["Balearica regulorum", 925459, null, [ ["Crowned crain", 100784, "Balearica regulorum gibbericeps" ] ] ] ] ] ] ], ["Mesitornithidae", 54372, null, [ ["Mesitornis", 54373, null, [ ["Brown roatelo", 54374, "Mesitornis unicolor" ] ] ] ] ], ["Otididae", 54375, null, [ ["Chlamydotis", 172679, null, [ ["Houbara bustard", 187382, "Chlamydotis macqueenii" ] ] ] ] ] ] ], ["Musophagiformes", 56301, null, [ ["Musophagidae", 56302, null, [ ["Tauraco", 56303, null, @@ -503,33 +512,32 @@ [ ["Great cormorant", 9209, "Phalacrocorax carbo" ] ] ] ] ], ["Threskiornithidae", 33574, null, [ ["Nipponia", 128389, null, [ ["Crested ibis", 128390, "Nipponia nippon" ] ] ] ] ] ] ], ["Phoenicopteriformes", 9214, null, [ ["Phoenicopteridae", 9215, null, [ ["Phoenicopterus", 9216, null, [ ["Phoenicopterus ruber", 9217, null, [ ["American flamingo", 9218, "Phoenicopterus ruber ruber" ] ] ] ] ] ] ] ] ], ["Piciformes", 9219, null, [ ["Picidae", 9220, null, [ ["Picoides", 36302, null, [ ["Downy woodpecker", 118200, "Picoides pubescens" ] ] ] ] ] ] ], ["Procellariiformes", 30449, null, [ ["Procellariidae", 30451, null, - [ ["Procellariinae", 85546, null, [ ["Fulmarus", 30454, null, - [ ["Northern fulmar", 30455, "Fulmarus glacialis" ] ] ] ] ] ] ] ] ], + [ ["Northern fulmar", 30455, "Fulmarus glacialis" ] ] ] ] ] ] ], ["Psittaciformes", 9223, null, [ ["Psittacidae", 9224, null, [ ["Amazona", 12929, null, [ ["Parrot", 241585, "Amazona vittata" ] ] ], ["Ara", 9225, null, [ ["Scarlet macaw", 176014, "Ara macao" ] ] ] ] ], ["Psittaculidae", 1545690, null, [ ["Melopsittacus", 13145, null, [ ["Budgerigar", 13146, "Melopsittacus undulatus" ] ] ] ] ] ] ], ["Sphenisciformes", 9230, null, [ ["Spheniscidae", 9231, null, [ ["Aptenodytes", 9232, null, [ ["Emperor penguin", 9233, "Aptenodytes forsteri" ] ] ], ["Pygoscelis", 9237, null, [ ["Adelie penguin", 9238, "Pygoscelis adeliae" ] ] ] ] ] ] ], @@ -630,31 +638,31 @@ [ ["Nanorana", 120497, null, [ ["Tibetan frog", 125878, "Nanorana parkeri" ] ] ] ] ] ] ] ] ] ] ] ] ] ] ] ] ] ] ] ] ], ["Coelacanthimorpha", 118072, null, [ ["Coelacanthiformes", 7894, null, [ ["Coelacanthidae", 7895, null, [ ["Latimeria", 7896, null, [ ["Coelacanth", 7897, "Latimeria chalumnae" ] ] ] ] ] ] ] ] ] ] ], ["Actinopterygii", 7898, null, [ ["Actinopteri", 186623, null, [ ["Neopterygii", 41665, null, [ ["Teleostei", 32443, null, [ ["Osteoglossocephalai", 1489341, null, [ ["Clupeocephala", 186625, null, [ ["Otomorpha", 186634, null, [ ["Ostariophysi", 32519, null, - [ ["Otophysa", 186626, null, + [ ["Otophysi", 186626, null, [ ["Cypriniphysae", 186627, null, [ ["Cypriniformes", 7952, null, [ ["Cyprinoidea", 30727, null, [ ["Cyprinidae", 7953, null, [ ["Danio", 7954, null, [ ["Zebrafish", 7955, "Danio rerio" ] ] ] ] ] ] ] ] ] ] ], ["Characiphysae", 186628, null, [ ["Characiformes", 7991, null, [ ["Characoidei", 1489739, null, [ ["Characidae", 7992, null, [ ["Characidae incertae sedis", 533331, null, [ ["Astyanax clade", 883878, null, [ ["Astyanax", 7993, null, [ ["Mexican tetra (cavefish)", 7994, "Astyanax mexicanus" ] ] ] ] ] ] ] ] ] ] ] ] ] ] ] ] ] ] ] ] ], ["Euteleosteomorpha", 1489388, null, @@ -806,44 +814,42 @@ [ ["Echinoida", 7675, null, [ ["Strongylocentrotidae", 31181, null, [ ["Strongylocentrotus", 7664, null, [ ["S. purpuratus", 7668, "Strongylocentrotus purpuratus" ] ] ] ] ] ] ] ] ] ] ] ] ] ] ] ] ] ] ] ] ], ["Protostomia", 33317, null, [ ["Ecdysozoa", 1206794, null, [ ["Panarthropoda", 88770, null, [ ["Arthropoda", 6656, null, [ ["Mandibulata", 197563, null, [ ["Pancrustacea", 197562, null, [ ["Hexapoda", 6960, null, [ ["Insecta", 50557, null, [ ["Dicondylia", 85512, null, [ ["Pterygota", 7496, null, [ ["Neoptera", 33340, null, - [ ["Endopterygota", 33392, null, + [ ["Holometabola", 33392, null, [ ["Diptera", 7147, null, [ ["Brachycera", 7203, null, [ ["Muscomorpha", 43733, null, [ ["Eremoneura", 480118, null, [ ["Cyclorrhapha", 480117, null, [ ["Schizophora", 43738, null, [ ["Acalyptratae", 43741, null, [ ["Ephydroidea", 43746, null, [ ["Drosophilidae", 7214, null, [ ["Drosophilinae", 43845, null, [ ["Drosophilini", 46877, null, - [ ["Drosophilina", 46879, null, - [ ["Drosophiliti", 186285, null, [ ["Drosophila", 7215, null, [ ["Sophophora", 32341, null, [ ["melanogaster group", 32346, null, [ ["melanogaster subgroup", 32351, null, [ ["D. melanogaster", 7227, "Drosophila melanogaster" ], ["D. erecta", 7220, "Drosophila erecta" ], ["D. sechellia", 7238, "Drosophila sechellia" ], ["D. simulans", 7240, "Drosophila simulans" ], ["D. yakuba", 7245, "Drosophila yakuba" ] ] ], ["ananassae subgroup", 32347, null, [ ["ananassae species complex", 545632, null, [ ["D. ananassae", 7217, "Drosophila ananassae" ] ] ], ["bipectinata species complex", 186282, null, [ ["D. bipectinata", 42026, "Drosophila bipectinata" ] ] ] ] ], ["elegans subgroup", 32348, null, @@ -873,31 +879,31 @@ ["Drosophila", 32281, null, [ ["immigrans group", 32304, null, [ ["nasuta subgroup", 32307, null, [ ["D. albomicans", 7291, "Drosophila albomicans" ] ] ] ] ], ["repleta group", 32321, null, [ ["mulleri subgroup", 32324, null, [ ["mojavensis species complex", 198037, null, [ ["D. mojavensis", 7230, "Drosophila mojavensis" ] ] ] ] ] ] ], ["virilis group", 32335, null, [ ["D. virilis", 7244, "Drosophila virilis" ] ] ] ] ], ["Hawaiian Drosophila", 504493, null, [ ["picture wing clade", 48384, null, [ ["grimshawi clade", 48301, null, [ ["grimshawi group", 48302, null, [ ["grimshawi subgroup", 32378, null, - [ ["D. grimshawi", 7222, "Drosophila grimshawi" ] ] ] ] ] ] ] ] ] ] ] ] ] ] ] ] ] ] ] ] ] ] ] ] ] ] ], + [ ["D. grimshawi", 7222, "Drosophila grimshawi" ] ] ] ] ] ] ] ] ] ] ] ] ] ] ] ] ] ] ] ] ] ] ], ["Calyptratae", 43742, null, [ ["Muscoidea", 43754, null, [ ["Muscidae", 7366, null, [ ["Muscinae", 43910, null, [ ["Muscini", 57894, null, [ ["Musca", 7369, null, [ ["Musca", 44052, null, [ ["M. domestica", 7370, "Musca domestica" ] ] ] ] ] ] ] ] ] ] ] ] ] ] ] ] ] ] ] ] ] ] ] ] ], ["Nematocera", 7148, null, [ ["Culicomorpha", 43786, null, [ ["Culicoidea", 41827, null, [ ["Culicidae", 7157, null, [ ["Anophelinae", 43816, null, [ ["Anopheles", 7164, null, [ ["Cellia", 44534, null, @@ -922,31 +928,31 @@ [ ["Apis", 7459, null, [ ["A. mellifera", 7460, "Apis mellifera" ] ] ] ] ] ] ] ] ] ] ] ] ] ] ] ] ] ] ] ] ] ] ] ] ] ] ] ] ] ] ] ] ] ] ] ] ], ["Nematoda", 6231, null, [ ["Chromadorea", 119089, null, [ ["Rhabditida", 6236, null, [ ["Rhabditoidea", 55879, null, [ ["Rhabditidae", 6243, null, [ ["Peloderinae", 55885, null, [ ["Caenorhabditis", 6237, null, [ ["C. elegans", 6239, "Caenorhabditis elegans" ], ["C. angaria", 860376, "Caenorhabditis angaria" ], ["C. brenneri", 135651, "Caenorhabditis brenneri" ], ["C. briggsae", 6238, "Caenorhabditis briggsae" ], ["C. japonica", 281687, "Caenorhabditis japonica" ], ["C. remanei", 31234, "Caenorhabditis remanei" ], - ["C. sp. 5 ju800", 497829, "Caenorhabditis sinica" ], + ["C. sp. 5 ju800", 1550068, "Caenorhabditis sinica" ], ["C. sp. 7 ju1286", 1094335, "Caenorhabditis afra" ], ["C. sp. 9 ju1422", 1611254, "Caenorhabditis nigoni" ], ["C. tropicalis", 1561998, "Caenorhabditis tropicalis" ] ] ] ] ] ] ], ["Heterorhabditidae", 33254, null, [ ["Heterorhabditis", 37861, null, [ ["H. bacteriophora/m31e", 37862, "Heterorhabditis bacteriophora" ] ] ] ] ] ] ], ["Panagrolaimoidea", 55746, null, [ ["Panagrolaimidae", 114848, null, [ ["Panagrellus", 6232, null, [ ["Microworm", 6233, "Panagrellus redivivus" ] ] ] ] ], ["Strongyloididae", 6246, null, [ ["Strongyloides", 6247, null, [ ["Threadworm", 34506, "Strongyloides ratti" ] ] ] ] ] ] ], ["Strongylida", 6308, null, [ ["Ancylostomatoidea", 33277, null, @@ -1056,32 +1062,32 @@ ["Bacteria", 2, null, [ ["Proteobacteria", 1224, null, [ ["Gammaproteobacteria", 1236, null, [ ["Pseudomonadales", 72274, null, [ ["Moraxellaceae", 468, null, [ ["Acinetobacter", 469, null, [ ["Acinetobacter calcoaceticus/baumannii complex", 909768, null, [ ["Acinetobacter baumannii", 470, null, [ ["Acinetobacter baumannii", 1100841, "Acinetobacter baumannii TYTH-1" ] ] ] ] ] ] ] ] ] ] ] ] ] ] ] ] ] ] ], ["Viruses", 10239, null, [ ["ssRNA viruses", 439488, null, [ ["ssRNA negative-strand viruses", 35301, null, [ ["Mononegavirales", 11157, null, [ ["Filoviridae", 11266, null, [ ["Ebolavirus", 186536, null, - [ ["Zaire ebolavirus", 186538, "Zaire ebolavirus" ], - ["Bundibugyo ebolavirus", 565995, "Bundibugyo virus" ], + [ ["Ebola virus", 186538, "Zaire ebolavirus" ], + ["Bundibugyo ebolavirus", 565995, "Bundibugyo ebolavirus" ], ["Reston ebolavirus", 186539, "Reston ebolavirus" ], ["Sudan ebolavirus", 186540, "Sudan ebolavirus" ], ["Tai forest ebolavirus", 186541, "Tai Forest ebolavirus" ] ] ], ["Marburgvirus", 186537, null, [ ["Marburg virus", 11269, "Marburg marburgvirus" ] ] ] ] ] ] ] ] ], ["ssRNA positive-strand viruses, no DNA stage", 35278, null, [ ["Nidovirales", 76804, null, [ ["Coronaviridae", 11118, null, [ ["Coronavirinae", 693995, null, [ ["Betacoronavirus", 694002, null, [ ["Severe acute respiratory syndrome-related coronavirus", 694009, null, [ ["SARS coronavirus", 227859, "SARS coronavirus" ] ] ] ] ] ] ] ] ] ] ] ] ] ] ], ["Retro-transcribing viruses", 35268, null, [ ["Retroviridae", 11632, null, [ ["Orthoretrovirinae", 327045, null,