3aa8f8f910395a46660ba59d42987df23fc6a453 hiram Wed Mar 29 14:18:10 2017 -0700 recording the schema for ncbiRefSeqOther extended bigBed schema refs #13673 diff --git src/hg/inc/ncbiRefSeqOther.as src/hg/inc/ncbiRefSeqOther.as new file mode 100644 index 0000000..32f6549 --- /dev/null +++ src/hg/inc/ncbiRefSeqOther.as @@ -0,0 +1,36 @@ +table ncbiRefSeqOtherBb +"Additional information for NCBI 'Other' annotation" + ( + string chrom; "Chromosome (or contig, scaffold, etc.)" + uint chromStart; "Start position in chromosome" + uint chromEnd; "End position in chromosome" + string name; "Name of item" + uint score; "Score from 0-1000" + char[1] strand; "+ or + uint thickStart; "Start of where display should be thick (start codon)" + uint thickEnd; "End of where display should be thick (stop codon)" + uint reserved; "Used as itemRgb as of 2004-11-22" + int blockCount; "Number of blocks" + int[blockCount] blockSizes; "Comma separated list of block sizes" + int[blockCount] chromStarts; "Start positions relative to chromStart" + + string gene; "gene name" + string gbkey; "genbank key type: CDS, Gene, V_segment, ncRNA, rRNA, tRNA" + string ID; "genbank ID" + string Dbxref; "DB cross reference" + string pseudo; "'true' if pseudogene" + string geneBiotype; "gene biotype: C_region, J_segment_pseudogene, pseudogene or other" + string Name2; "additional gene name" + string description; "annotation description" + string geneSynonym; "additional gene name" + string product; "gene product" + string ncrnaClass; "ncRNA class: miRNA or empty" + string exception; "exception note" + string partial; "'true' if partial" + string Note; "additional note" + string anticodon; "anti-codon" + string startRange; "start range" + string endRange; "end range" + string codons; "codons" + string modelEvidence; "evidence notes" +)