31dffd2604b7ba4ab85a2dc0d45246ef58838907
angie
  Wed Mar 15 13:59:23 2017 -0700
Better warning message for HGVS protein terms pasted into hgVai.  refs #11460 notes 30, 31.

diff --git src/hg/inc/hgHgvs.h src/hg/inc/hgHgvs.h
index 95c4b74..17c96c7 100644
--- src/hg/inc/hgHgvs.h
+++ src/hg/inc/hgHgvs.h
@@ -217,18 +217,19 @@
 // VCF header definitions of FILTER and INFO terms created by hgvsToVcfRow:
 #define HGVS_VCF_HEADER_DEFS \
         "##FILTER=<ID=HgvsRefAssertedMismatch," \
         "Description=\"Asserted reference sequence in HGVS term does not match actual " \
         "reference sequence\">\n" \
         "##FILTER=<ID=HgvsRefGenomicMismatch," \
         "Description=\"HGVS reference sequence does not match genomic sequence; " \
         "HGVS reference sequence is included in ALT\">\n" \
         "##INFO=<ID=DupToIns,Number=0,Type=Flag," \
         "Description=\"HGVS dup (duplication) was converted to insertion\">\n" \
         "##INFO=<ID=BasesShifted,Number=1,Type=Integer," \
         "Description=\"Position of HGVS variant was shifted this number of bases to the left\">\n"
 
 struct vcfRow *hgvsToVcfRow(char *db, char *term, boolean doLeftShift, struct dyString *dyError);
 /* Convert HGVS to a row of VCF suitable for sorting & printing.  If unable, return NULL and
- * put the reason in dyError. */
+ * put the reason in dyError.  Protein terms are ambiguous at the nucleotide level so they are
+ * not supported at this point. */
 
 #endif /* HGHGVS_H */