File Changes for chmalee

v346_base to v347_preview (2017-03-13 to 2017-03-20) v347

• src/hg/makeDb/trackDb/human/chainNetLegacy.ra
  • lines changed 16, context: html, text, full: html, text
    823e98e5030b16ed02e991fa7e615b7558843002 Fri Mar 17 12:08:06 2017 -0700
    Attempting to update human trackDb so rn6 chain gets into placental composite and rn4 and rn5 get into legacy composite, refs #18656
  • lines changed 30, context: html, text, full: html, text
    8eade3c85cdd01a89451104afb367f30f0ccc70f Fri Mar 17 12:25:40 2017 -0700
    I had the stanzas in the chainNetLegacy file wrong, which is why rn5 was still showing up in the placental track, refs #18696
• src/hg/makeDb/trackDb/human/chainNetPlacental.ra
  • lines changed 2, context: html, text, full: html, text
    823e98e5030b16ed02e991fa7e615b7558843002 Fri Mar 17 12:08:06 2017 -0700
    Attempting to update human trackDb so rn6 chain gets into placental composite and rn4 and rn5 get into legacy composite, refs #18656
  • lines changed 1, context: html, text, full: html, text
    0d8c4490d924c6f05de1b4742bdb942449e44d74 Fri Mar 17 13:51:59 2017 -0700
    Woops don't need an alpha tag on chainNetRn6 on hg38 browser, refs #18656
• src/hg/makeDb/trackDb/human/chainNetRn6.ra
  • lines changed 15, context: html, text, full: html, text
    823e98e5030b16ed02e991fa7e615b7558843002 Fri Mar 17 12:08:06 2017 -0700
    Attempting to update human trackDb so rn6 chain gets into placental composite and rn4 and rn5 get into legacy composite, refs #18656
• src/hg/makeDb/trackDb/mouse/mm10/trackDb.gliresChainNet.ra
  • lines changed 6, context: html, text, full: html, text
    e5c4fd9844766a106dc472a9f9be4f582a289463 Fri Mar 17 13:16:45 2017 -0700
    Moving rn5 chain to mm10 legacy composite and rn6 chain to glires composite, refs #18656
• src/hg/makeDb/trackDb/mouse/mm10/trackDb.previousVersionsChainNet.ra
  • lines changed 16, context: html, text, full: html, text
    e5c4fd9844766a106dc472a9f9be4f582a289463 Fri Mar 17 13:16:45 2017 -0700
    Moving rn5 chain to mm10 legacy composite and rn6 chain to glires composite, refs #18656
• src/hg/makeDb/trackDb/rat/rn6/cons20way.html
  • lines changed 1, context: html, text, full: html, text
    c32d75066fe1d800ff88845a716c9dc3b24d2669 Thu Mar 16 11:32:16 2017 -0700
    Replacing link to prairie vole gateway page with link to 2bit file since micOch1 browser not yet released, refs #18656
• src/hg/makeDb/trackDb/rat/rn6/trackDb.20way.ra
  • lines changed 4, context: html, text, full: html, text
    f35f9381364db4b2c41706ad280cd1708df839e0 Wed Mar 15 10:50:54 2017 -0700
    Turning off chain/nets on rn6 by default, turning off cons elems and phastcons tracks by default, and deleting useless visibility line from chainNet.ra in preparation for 20way release, refs #18656
• src/hg/makeDb/trackDb/rat/rn6/trackDb.chainNet.ra
  • lines changed 1, context: html, text, full: html, text
    f35f9381364db4b2c41706ad280cd1708df839e0 Wed Mar 15 10:50:54 2017 -0700
    Turning off chain/nets on rn6 by default, turning off cons elems and phastcons tracks by default, and deleting useless visibility line from chainNet.ra in preparation for 20way release, refs #18656
• src/hg/makeDb/trackDb/rat/rn6/vertebrateChainNet.ra
  • lines changed 3, context: html, text, full: html, text
    f35f9381364db4b2c41706ad280cd1708df839e0 Wed Mar 15 10:50:54 2017 -0700
    Turning off chain/nets on rn6 by default, turning off cons elems and phastcons tracks by default, and deleting useless visibility line from chainNet.ra in preparation for 20way release, refs #18656
  • lines changed 6, context: html, text, full: html, text
    c153e49014a609d2691f4a1f62260ddf137f34dd Wed Mar 15 11:29:04 2017 -0700
    fixing default visibilities when chain/net track is turned on for rn6, refs #18656