35a0506fd96116dd8edc2ab02522070fdcd8f54f markd Wed Mar 15 13:11:03 2017 -0700 backed out previous change to link to transmap source assembly; it's not the correct fix diff --git src/hg/hgc/transMapClick.c src/hg/hgc/transMapClick.c index 9ca6166..d8dbafa 100644 --- src/hg/hgc/transMapClick.c +++ src/hg/hgc/transMapClick.c @@ -308,33 +308,33 @@ { printf("<TABLE class=\"transMap\">\n"); printf("<CAPTION>Source Alignment</CAPTION>\n"); printf("<TBODY>\n"); // organism/assembly printf("<TR CLASS=\"transMapLeft\"><TD>Organism<TD>%s (%s)</TR>\n", bag->meta->commonName, bag->meta->scientificName); printf("<TR CLASS=\"transMapLeft\"><TD>Genome<TD>%s</TR>\n", bag->meta->srcDb); printf("<TR CLASS=\"transMapLeft\"><TD>Source<TD>%s</TR>\n", formatGeneSrcSet(bag->srcSet)); // position printf("<TR CLASS=\"transMapLeft\"><TD>Position\n"); printf("<TD CLASS=\"transMapNoWrap\">"); if (bag->srcDbIsActive) - printf("<A HREF=\"%s&db=%s&position=%s:%d-%d\" target=_blank>" + printf("<A HREF=\"%s?db=%s&position=%s:%d-%d\" target=_blank>" "%s:%d-%d</A>", - hgTracksPathAndSettings(), bag->meta->srcDb, + hgTracksName(), bag->meta->srcDb, bag->meta->srcChrom, bag->meta->srcChromStart, bag->meta->srcChromEnd, bag->meta->srcChrom, bag->meta->srcChromStart, bag->meta->srcChromEnd); else printf("%s:%d-%d", bag->meta->srcChrom, bag->meta->srcChromStart, bag->meta->srcChromEnd); printf("</TR>\n"); // % identity and % aligned, values stored as 1000*fraction ident printf("<TR CLASS=\"transMapLeft\"><TD>Identity<TD>%0.1f%%</TR>\n", bag->meta->srcScore/10.0); printf("<TR CLASS=\"transMapLeft\"><TD>Aligned<TD>%0.1f%%</TR>\n", bag->meta->srcAligned/10.0); // gene and CDS printf("<TR CLASS=\"transMapLeft\"><TD>Gene<TD>%s</TR>\n", strOrNbsp(bag->meta->geneName));