fa7d26e86c79a3171d2a32bcfd02afeb11ca0132 cath Wed Mar 22 12:10:41 2017 -0700 Removing 5 obsolete files: hgTextHelp.html, trackDescriptions.html definitions.html, jobs.html, knownIssues.html, refs #17656 diff --git src/hg/htdocs/knownIssues.html src/hg/htdocs/knownIssues.html deleted file mode 100755 index d635772..0000000 --- src/hg/htdocs/knownIssues.html +++ /dev/null @@ -1,221 +0,0 @@ -<!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 3.2//EN"> -<HTML> -<HEAD> - <META HTTP-EQUIV="Content-Type" CONTENT="text/html;CHARSET=iso-8859-1"> - <META name="description" content="UCSC Genome Browser FAQ"> - <META name="keywords" content="genome, genome browser, genome assembly, UCSC, bioinformatics, sequence, gene prediction, SNP, EST, mRNA"> - <TITLE>UCSC Genome Bioinformatics: Known Issues</TITLE> - <LINK REL="STYLESHEET" HREF="style/HGStyle.css"> -</HEAD> -<BODY BGCOLOR="FFF9D2" LINK="0000CC" VLINK="#330066" ALINK="#330066"> -<A NAME="TOP"></A> - -<TABLE BORDER=0 CELLPADDING=0 CELLSPACING=0 WIDTH="100%"><TR><TH COLSPAN=2 ALIGN="left"><IMG SRC="images/title.jpg" ALT="UCSC Genome Bioinformatics"></TH></TR> - -<TR><TD COLSPAN=2 HEIGHT=40><!--#include virtual="./cgi-bin/hgMenubar"--></TD></TR> -<!--Content Table------------------------------------------------------------> - <!--outer table is for border purposes--> - <TABLE WIDTH="100%" BGCOLOR="#888888" BORDER="0" CELLSPACING="0" CELLPADDING="1"> - <TR><TD> - <TABLE BGCOLOR="fffee8" WIDTH="100%" BORDER="0" CELLSPACING="0" CELLPADDING="0"> - <TR><TD> - <TABLE BGCOLOR="D9E4F8" BACKGROUND="images/hr.gif" WIDTH=100%> - <TR><TD> - <!--cheap trick to get background on row to be continuous--> - <TABLE CELLPADDING=0 CELLSPACING=0 MARGIN=0 WIDTH="100%"> - <TR><TD ALIGN="left"> - <FONT SIZE="4"><b> UCSC Genome Browser Known Issues</b></FONT> - </TD></TR> - </TABLE> - </TD></TR> - </TABLE> - <TABLE BGCOLOR="fffee8" WIDTH="100%" CELLPADDING=0> - <TR><TH HEIGHT=10></TH></TR> - <TR><TD WIDTH=10> </TD> - <TD> - <P> - This page lists known open issues and problems in the current - release of the UCSC Genome Browser software and data sets. - <UL> - <LI><A HREF="#issue1">GenBank date off by one month</A> - <LI><A HREF="#issue2">EST descriptions missing</A> - <LI><A HREF="#issue3">Product name field truncated</A> - <LI><A HREF="#issue4">SNPs map to 2 different positions</A> - <LI><A HREF="#issue5">Repeatmasking of danRer2 chr1</A> - </UL> - </TD><TD WIDTH=15></TD> - </TR> - </TABLE><BR> - </TD></TR> - </TABLE> - </TD></TR> - </TABLE> - <BR> - -<!--Content Table------------------------------------------------------------> -<A NAME="issue1"></A> - <!--outer table is for border purposes--> - <TABLE WIDTH="100%" BGCOLOR="#888888" BORDER="0" CELLSPACING="0" CELLPADDING="1"> - <TR><TD> - <TABLE BGCOLOR="fffee8" WIDTH="100%" BORDER="0" CELLSPACING="0" CELLPADDING="0"> - <TR><TD> - <TABLE BGCOLOR="D9E4F8" BACKGROUND="images/hr.gif" WIDTH=100%> - <TR><TD> - <!--cheap trick to get background on row to be continuous--> - <TABLE CELLPADDING=0 CELLSPACING=0 MARGIN=0 WIDTH="100%"> - <TR><TD ALIGN="left"> - <FONT SIZE="4"><b> GenBank date off by one month</b></FONT> - </TD></TR> - </TABLE> - </TD></TR> - </TABLE> - <TABLE BGCOLOR="fffee8" WIDTH="100%" CELLPADDING=0> - <TR><TH HEIGHT=10></TH></TR> - <TR><TD WIDTH=10> </TD> - <TD> - <P> - Enter text here. - </TD><TD WIDTH=15></TD> - </TR> - </TABLE><BR> - </TD></TR> - </TABLE> - </TD></TR> - </TABLE> - <BR> - -<!--Content Table------------------------------------------------------------> -<A NAME="issue2"></A> - <!--outer table is for border purposes--> - <TABLE WIDTH="100%" BGCOLOR="#888888" BORDER="0" CELLSPACING="0" CELLPADDING="1"> - <TR><TD> - <TABLE BGCOLOR="fffee8" WIDTH="100%" BORDER="0" CELLSPACING="0" CELLPADDING="0"> - <TR><TD> - <TABLE BGCOLOR="D9E4F8" BACKGROUND="images/hr.gif" WIDTH=100%> - <TR><TD> - <!--cheap trick to get background on row to be continuous--> - <TABLE CELLPADDING=0 CELLSPACING=0 MARGIN=0 WIDTH="100%"> - <TR><TD ALIGN="left"> - <FONT SIZE="4"><b> EST descriptions missing</b></FONT> - </TD></TR> - </TABLE> - </TD></TR> - </TABLE> - <TABLE BGCOLOR="fffee8" WIDTH="100%" CELLPADDING=0> - <TR><TH HEIGHT=10></TH></TR> - <TR><TD WIDTH=10> </TD> - <TD> - <P> - Enter text here. - </TD><TD WIDTH=15></TD> - </TR> - </TABLE><BR> - </TD></TR> - </TABLE> - </TD></TR> - </TABLE> - <BR> - -<!--Content Table------------------------------------------------------------> -<A NAME="issue3"></A> - <!--outer table is for border purposes--> - <TABLE WIDTH="100%" BGCOLOR="#888888" BORDER="0" CELLSPACING="0" CELLPADDING="1"> - <TR><TD> - <TABLE BGCOLOR="fffee8" WIDTH="100%" BORDER="0" CELLSPACING="0" CELLPADDING="0"> - <TR><TD> - <TABLE BGCOLOR="D9E4F8" BACKGROUND="images/hr.gif" WIDTH=100%> - <TR><TD> - <!--cheap trick to get background on row to be continuous--> - <TABLE CELLPADDING=0 CELLSPACING=0 MARGIN=0 WIDTH="100%"> - <TR><TD ALIGN="left"> - <FONT SIZE="4"><b> Product name field truncated</b></FONT> - </TD></TR> - </TABLE> - </TD></TR> - </TABLE> - <TABLE BGCOLOR="fffee8" WIDTH="100%" CELLPADDING=0> - <TR><TH HEIGHT=10></TH></TR> - <TR><TD WIDTH=10> </TD> - <TD> - <P> - Enter text here. - </TD><TD WIDTH=15></TD> - </TR> - </TABLE><BR> - </TD></TR> - </TABLE> - </TD></TR> - </TABLE> - <BR> - -<!--Content Table------------------------------------------------------------> -<A NAME="issue4"></A> - <!--outer table is for border purposes--> - <TABLE WIDTH="100%" BGCOLOR="#888888" BORDER="0" CELLSPACING="0" CELLPADDING="1"> - <TR><TD> - <TABLE BGCOLOR="fffee8" WIDTH="100%" BORDER="0" CELLSPACING="0" CELLPADDING="0"> - <TR><TD> - <TABLE BGCOLOR="D9E4F8" BACKGROUND="images/hr.gif" WIDTH=100%> - <TR><TD> - <!--cheap trick to get background on row to be continuous--> - <TABLE CELLPADDING=0 CELLSPACING=0 MARGIN=0 WIDTH="100%"> - <TR><TD ALIGN="left"> - <FONT SIZE="4"><b> SNPs map to 2 different positions</b></FONT> - </TD></TR> - </TABLE> - </TD></TR> - </TABLE> - <TABLE BGCOLOR="fffee8" WIDTH="100%" CELLPADDING=0> - <TR><TH HEIGHT=10></TH></TR> - <TR><TD WIDTH=10> </TD> - <TD> - <P> - Enter text here. - </TD><TD WIDTH=15></TD> - </TR> - </TABLE><BR> - </TD></TR> - </TABLE> - </TD></TR> - </TABLE> - <BR> - -<!--Content Table------------------------------------------------------------> -<A NAME="issue5"></A> - <!--outer table is for border purposes--> - <TABLE WIDTH="100%" BGCOLOR="#888888" BORDER="0" CELLSPACING="0" CELLPADDING="1"> - <TR><TD> - <TABLE BGCOLOR="fffee8" WIDTH="100%" BORDER="0" CELLSPACING="0" CELLPADDING="0"> - <TR><TD> - <TABLE BGCOLOR="D9E4F8" BACKGROUND="images/hr.gif" WIDTH=100%> - <TR><TD> - <!--cheap trick to get background on row to be continuous--> - <TABLE CELLPADDING=0 CELLSPACING=0 MARGIN=0 WIDTH="100%"> - <TR><TD ALIGN="left"> - <FONT SIZE="4"><b> Repeatmasking of danRer2 chr1</b></FONT> - </TD></TR> - </TABLE> - </TD></TR> - </TABLE> - <TABLE BGCOLOR="fffee8" WIDTH="100%" CELLPADDING=0> - <TR><TH HEIGHT=10></TH></TR> - <TR><TD WIDTH=10> </TD> - <TD> - <P> - An error was found with the RepeatMasker output for chr1 - on the Zebrafish (danRer2) assembly. This resulted in an - incomplete masking of the repeats in the <em>chr1.fa</em>. - This error has been corrected for the data in the - <em>chr1.fa</em> downloads file. However, blastz has not - been rerun on chr1, which may result in some - inconsistencies. </P> - </TD><TD WIDTH=15></TD> - </TR> - </TABLE><BR> - </TD></TR> - </TABLE> - </TD></TR> - </TABLE> - </TD><TD WIDTH=15></TD></TR> -</TABLE> -</BODY></HTML>