Commits for galt

v347_preview to v347_preview2 (2017-03-20 to 2017-03-27) v347

3b7af84b7d8ebe9d30811103accd61584add9d9a Sun Mar 19 22:24:29 2017 -0700

• Initial check-in of proxy stuff. Added support for https_proxy for configuring https proxy. Added no_proxy for configuring domain suffixes which should be excluded from proxying. src/product/README.proxy updated. There are probably some documentation pages that will still need updating.
  • src/hg/lib/cart.c - lines changed 10, context: html, text, full: html, text
  • src/htslib/knetfile.c - lines changed 3, context: html, text, full: html, text
  • src/inc/common.h - lines changed 3, context: html, text, full: html, text
  • src/inc/https.h - lines changed 1, context: html, text, full: html, text
  • src/inc/net.h - lines changed 6, context: html, text, full: html, text
  • src/lib/common.c - lines changed 14, context: html, text, full: html, text
  • src/lib/https.c - lines changed 80, context: html, text, full: html, text
  • src/lib/net.c - lines changed 28, context: html, text, full: html, text
  • src/product/README.proxy - lines changed 18, context: html, text, full: html, text

417d09f28ac6349b73cbde88a4379962d195fec9 Wed Mar 22 15:28:58 2017 -0700

• fixing some minor details for no_proxy.
  • src/hg/lib/cart.c - lines changed 4, context: html, text, full: html, text
  • src/product/README.proxy - lines changed 8, context: html, text, full: html, text

4fdbee9b0b51fa1a9d8da8e366a27e9abf306b80 Wed Mar 22 16:00:15 2017 -0700

• too much hassle to bother with for now. needs code from kent stuff.
  • src/htslib/knetfile.c - lines changed 3, context: html, text, full: html, text

631c995e82e53c5413caa7c0bf47be4c49162137 Wed Mar 22 17:08:10 2017 -0700

• Documentation changes to add new proxy settings. refs #19124
  • src/hg/htdocs/admin/mirrorManual.html - lines changed 15, context: html, text, full: html, text
  • src/hg/htdocs/goldenPath/help/gbib.html - lines changed 8, context: html, text, full: html, text
  • src/product/README.proxy - lines changed 9, context: html, text, full: html, text
  • src/product/ex.hg.conf - lines changed 7, context: html, text, full: html, text
  • src/product/mirrorManual.txt - lines changed 17, context: html, text, full: html, text

cfd72459cd19002cba98f593d9e83003b64ad1ea Wed Mar 22 18:19:22 2017 -0700

• fixing compiler complaints.
  • src/lib/https.c - lines changed 1, context: html, text, full: html, text

0af1ab08a87d41f37c7e04185be43abd55c1c8de Wed Mar 22 18:27:16 2017 -0700

• just for improved consistency
  • src/lib/https.c - lines changed 2, context: html, text, full: html, text

36071edc0403574d51170357bab076e39d076826 Thu Mar 23 16:42:09 2017 -0700

• Adds ftp proxy capability to system. Works with Squid 3.5 ftp_port at least. refs #19124
  • src/hg/htdocs/admin/mirrorManual.html - lines changed 6, context: html, text, full: html, text
  • src/hg/htdocs/goldenPath/help/gbib.html - lines changed 6, context: html, text, full: html, text
  • src/hg/lib/cart.c - lines changed 3, context: html, text, full: html, text
  • src/lib/net.c - lines changed 30, context: html, text, full: html, text
  • src/product/README.proxy - lines changed 3, context: html, text, full: html, text
  • src/product/ex.hg.conf - lines changed 5, context: html, text, full: html, text
  • src/product/mirrorManual.txt - lines changed 7, context: html, text, full: html, text

8ae3277c2dcbae99c1058939bfcd004625765e28 Thu Mar 23 16:46:25 2017 -0700

• merge conflict resolved.
  • src/hg/htdocs/admin/mirrorManual.html - lines changed 279, context: html, text, full: html, text

10ed5851072ff7a4c8ab8021f0baa1dd578feef4 Thu Mar 23 22:56:06 2017 -0700

• added logProxy=on setting to hg.conf to help confirm that the proxy is actually doing the expected thing. Not meant to be left on in production. refs #19124
  • src/hg/lib/cart.c - lines changed 3, context: html, text, full: html, text
  • src/lib/https.c - lines changed 3, context: html, text, full: html, text
  • src/lib/net.c - lines changed 8, context: html, text, full: html, text
  • src/product/README.proxy - lines changed 9, context: html, text, full: html, text
  • src/product/mirrorManual.txt - lines changed 9, context: html, text, full: html, text

4d7dee6cf2f288286da304fb82d4f379cc45c5b1 Thu Mar 23 23:36:08 2017 -0700

• avoid errAbort in https.c
  • src/lib/https.c - lines changed 6, context: html, text, full: html, text

0b073cd9000113cdb5e48ef772449ede60e1dea0 Fri Mar 24 01:31:59 2017 -0700

• little fix to cart.c so definitions happen before cartNew called.
  • src/hg/lib/cart.c - lines changed 11, context: html, text, full: html, text