Commits for hiram

v347_preview to v347_preview2 (2017-03-20 to 2017-03-27) v347

eceae68b803365df1db9560ec075e3089f32c7bc Mon Mar 20 13:53:29 2017 -0700

• adding lastz/chain/net for manPen1 aquChr2 bisBis1 refs #15515 #15096 #15388
  • src/hg/makeDb/doc/hg38/lastzRuns.txt - lines changed 195, context: html, text, full: html, text

57c6f2c734ab1bcd357cc1b673b14aeb8770767d Mon Mar 20 14:46:47 2017 -0700

• update assHub script file list refs #13553
  • src/hg/utils/automation/makefile - lines changed 13, context: html, text, full: html, text

dc25e3fec2c61b58e296023dc63ec8b48daac29d Tue Mar 21 09:49:56 2017 -0700

• adding db to table names refs #17545
  • src/hg/utils/automation/makePushQSql.pl - lines changed 17, context: html, text, full: html, text

c95a5def0f83a4c3c6b8c2a6fe33bc385a0dea8c Tue Mar 21 10:51:52 2017 -0700

• quick peek at a 4-way on Chinese tree shrew no redmine
  • src/hg/htdocs/images/phylo/tupChi1_4way.png - lines changed 0, context: html, text, full: html, text (a binary file or whitespace-only change shows no diff)

3ce9513e52c3e0eb899cb6dba5f570eb3f047fb8 Tue Mar 21 13:31:01 2017 -0700

• adding bisBis1 chainNet definitions refs #15388
  • src/hg/makeDb/trackDb/human/chainNetPlacental.ra - lines changed 17, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/mouse/mm10/trackDb.placentalsChainNet.ra - lines changed 17, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/trackDb.chainNet.ra - lines changed 52, context: html, text, full: html, text

d9e42884ec51af52682c0738ba79c9c695166c29 Tue Mar 21 14:10:34 2017 -0700

• add nanPar1 chainNet refs #15056
  • src/hg/makeDb/trackDb/trackDb.chainNet.sarcopterygii.ra - lines changed 58, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/xenTro/xenTro7/trackDb.chainNet.ra - lines changed 16, context: html, text, full: html, text

96a905b7edc9270b666464d710e8d793760caa66 Tue Mar 21 14:25:49 2017 -0700

• adding manPen1 chainNet definitions refs #15515
  • src/hg/makeDb/trackDb/human/chainNetPlacental.ra - lines changed 17, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/mouse/mm10/trackDb.placentalsChainNet.ra - lines changed 17, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/trackDb.chainNet.ra - lines changed 52, context: html, text, full: html, text

bf201e01e0bdda16197a3ad1f0fefdfc2f4fbb93 Wed Mar 22 10:13:59 2017 -0700

• blat server setups and default position established refs #15056 #15388 #15515
  • src/hg/makeDb/doc/bisBis1/initialBuild.txt - lines changed 22, context: html, text, full: html, text
  • src/hg/makeDb/doc/manPen1/initialBuild.txt - lines changed 21, context: html, text, full: html, text
  • src/hg/makeDb/doc/nanPar1/initialBuild.txt - lines changed 21, context: html, text, full: html, text

7e016783aa23fc41598e2c1c3136286033e81cef Wed Mar 22 14:19:05 2017 -0700

• adding ci3 and cioSav2 chainNet definitions refs #16628
  • src/hg/makeDb/trackDb/trackDb.chainNet.other.ra - lines changed 119, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/trackDb.ra - lines changed 1, context: html, text, full: html, text

485b8d1a5b85c64f08d1f4db88b7782a6ca24b3f Wed Mar 22 14:21:59 2017 -0700

• adding cioSav2 chainNet refs #16628
  • src/hg/makeDb/schema/all.joiner - lines changed 1, context: html, text, full: html, text

d88ed49afc8a2ccbd24afa9c52d5854bca03686c Mon Mar 27 09:58:23 2017 -0700

• v347 preview2 refs #18964
  • src/utils/qa/weeklybld/buildEnv.csh - lines changed 2, context: html, text, full: html, text