cb480f172185464534e839cffc8cc04fb2888e77 ceisenhart Fri Apr 21 14:38:19 2017 -0700 Updating the usage statement, refs #19155 diff --git src/utils/expMatrixToBarchartBed/expMatrixToBarchartBed src/utils/expMatrixToBarchartBed/expMatrixToBarchartBed index bf12497..4c3d068 100755 --- src/utils/expMatrixToBarchartBed/expMatrixToBarchartBed +++ src/utils/expMatrixToBarchartBed/expMatrixToBarchartBed @@ -1,21 +1,19 @@ #!/usr/bin/env python2.7 # expMatrixToBarchartBed """ -Generate a barChart bed6+2 file from a matrix, meta data, and coordinates. A bed file for each -sample type in the meta data file will be made in the directory where the script is run. These -bed files will be names <sample type>.bed and are bed6 format. +Generate a barChart bed6+4 file from a matrix, meta data, and coordinates. """ import os import sys import argparse import tempfile def parseArgs(args): """ Parse the command line arguments. """ parser= argparse.ArgumentParser(description = __doc__) parser.add_argument ("metaFile", help = " Two column no header, the first column is the samples which should match " + \ "the matrix, the second is the grouping (cell type, tissue, etc)", type = argparse.FileType("r"))