fa5419167433c0bf67c95aea3bf10d248ca43657
galt
  Thu Apr 20 14:13:05 2017 -0700
Swapping out the Linus Torvalds version of sha1 from git with a free version not encumbered by license questions. It is smaller and even slightly faster. Maybe compilers have improved.

diff --git src/lib/tests/makefile src/lib/tests/makefile
index f425988..09522a3 100644
--- src/lib/tests/makefile
+++ src/lib/tests/makefile
@@ -1,30 +1,30 @@
 kentSrc = ../..
 include ../../inc/common.mk
 
 ifeq (${USE_TABIX},1)
     TABIX_TESTS=tabixTest vcfTest
 else
     TABIX_TESTS=
 endif
 
 MYLIBDIR = ../../lib/${MACHTYPE}
 MYLIBS = ${MYLIBDIR}/jkweb.a
 BIN_DIR = bin/${MACHTYPE}
 
 test: errCatchTest htmlPageTest htmlExpandUrlTest pipelineTests dyStringTest \
-    mimeTests base64Tests quotedPTests safeTest hashTest fetchUrlTest gitSha1Test gff3Test \
+    mimeTests base64Tests quotedPTests safeTest hashTest fetchUrlTest sha1Test gff3Test \
     ${TABIX_TESTS} hacTreeTest testSumDoubles
 	rm -r output fetchUrlTest gitSha1Test
 	@echo tested all
 
 
 mkdirs:
 	${MKDIR} output ${BIN_DIR}
 
 testSumDoubles: testSumDoubles.o ${MYLIBS}
 	${CC} ${COPT} -o ./testSumDoubles testSumDoubles.o ${MYLIBS} ${L}
 
 errCatchTest: errCatchTest.o ${MYLIBS} mkdirs
 	${CC} ${COPT} -o ${BIN_DIR}/errCatchTest errCatchTest.o ${MYLIBS} ${L}
 	${STRIP} ${BIN_DIR}/errCatchTest${EXE}
 	${BIN_DIR}/errCatchTest secret > output/errCatch.good
@@ -222,32 +222,32 @@
 	${BIN_DIR}/testHash input/$@.txt > output/$@.out
 	diff expected/$@.out output/$@.out
 
 ${BIN_DIR}/testQuotedString: mkdirs testQuotedString.o ${MYLIBS}
 	${CC} ${COPT} -o ${BIN_DIR}/testQuotedString testQuotedString.o ${MYLIBS} ${L}
 
 testQuotedString:	${BIN_DIR}/testQuotedString mkdirs
 	${BIN_DIR}/testQuotedString -verbose=2 quote this\\ following
 
 miniBlat:  mkdirs miniBlat.o ${MYLIBS}
 	${CC} ${COPT} -o miniBlat miniBlat.o ${MYLIBS} ${L}
 
 fetchUrlTest:  mkdirs fetchUrlTest.o ${MYLIBS}
 	${CC} ${COPT} -o fetchUrlTest fetchUrlTest.o ${MYLIBS} ${L}
 
-gitSha1Test:  mkdirs gitSha1Test.o ${MYLIBS}
-	${CC} ${COPT} -o gitSha1Test gitSha1Test.o ${MYLIBS} ${L}
+sha1Test:  mkdirs sha1Test.o ${MYLIBS}
+	${CC} ${COPT} -o sha1Test sha1Test.o ${MYLIBS} ${L}
 
 ##
 # gff3 tests
 ##
 gff3Tester=${BIN_DIR}/gff3Tester
 gff3Test: gff3SacCerTest gff3ErrorCasesTest gff3DiscontiousTest
 
 # FIXME: doesn't work yet
 # gff3SpecialCasesTest
 
 gff3SacCerTest: ${gff3Tester} mkdirs
 	${gff3Tester} input/sacCerTest.gff3 output/$@.out
 	diff expected/$@.out output/$@.out
 gff3SpecialCasesTest: ${gff3Tester} mkdirs
 	${gff3Tester} input/specialCasesTest.gff3 output/$@.out