ed16fa412c2b0d65563bd277e3bc64d7e8c5d4a1
braney
  Wed Apr 5 15:12:20 2017 -0700
oops... only turn indelPolyA on for DNA alignments in custom BLAT tracks

diff --git src/hg/hgc/hgc.c src/hg/hgc/hgc.c
index 23a9608..6d01b9b 100644
--- src/hg/hgc/hgc.c
+++ src/hg/hgc/hgc.c
@@ -25198,32 +25198,32 @@
  * Bring up the bigPsl detail page with all the alignments. */
 {
 char *trackName = cartString(cart, "trackName");
 char *trackDescription = cartString(cart, "trackDescription");
 char *pslName, *faName, *qName;
 parseSs(fileNames, &pslName, &faName, &qName);
 
 struct tempName bigBedTn;
 trashDirDateFile(&bigBedTn, "hgBlat", "bp", ".bb");
 char *bigBedFile = bigBedTn.forCgi;
 makeBigPsl(pslName, faName, database, bigBedFile);
 
 char* host = getenv("HTTP_HOST");
 
 boolean isProt = cgiOptionalString("isProt") != NULL;
-char *customTextTemplate = "track type=bigPsl indelDoubleInsert=on indelDoubleInsert=on indelPolyA=on  pslFile=%s visibility=pack showAll=on htmlUrl=http://%s/goldenPath/help/hgUserPsl.html %s bigDataUrl=%s name=\"%s\" description=\"%s\"\n";  
-char *extraForMismatch = "showDiffBasesAllScales=. baseColorUseSequence=lfExtra baseColorDefault=diffBases";
+char *customTextTemplate = "track type=bigPsl indelDoubleInsert=on indelDoubleInsert=on pslFile=%s visibility=pack showAll=on htmlUrl=http://%s/goldenPath/help/hgUserPsl.html %s bigDataUrl=%s name=\"%s\" description=\"%s\"\n";  
+char *extraForMismatch = "indelPolyA=on  showDiffBasesAllScales=. baseColorUseSequence=lfExtra baseColorDefault=diffBases";
   
 if (isProt)
     extraForMismatch = "";
 char buffer[4096];
 safef(buffer, sizeof buffer, customTextTemplate, bigBedTn.forCgi, host, extraForMismatch, bigBedTn.forCgi, trackName, trackDescription);
 
 struct customTrack *ctList = getCtList();
 struct customTrack *newCts = customFactoryParse(database, buffer, FALSE, NULL);
 theCtList = customTrackAddToList(ctList, newCts, NULL, FALSE);
 
 customTracksSaveCart(database, cart, theCtList);
 
 cartSetString(cart, "i", "PrintAllSequences");
 hgCustom(newCts->tdb->track, NULL);
 }