760d941586a240c1b4c4e1143f1fd2a3f8ff96c1
braney
  Fri Apr 7 11:26:45 2017 -0700
add the ability to specify a fielded tab-sep file for metadata in a
track hub

diff --git src/lib/fieldedTable.c src/lib/fieldedTable.c
index 8ee4546..8a9c120 100644
--- src/lib/fieldedTable.c
+++ src/lib/fieldedTable.c
@@ -1,27 +1,28 @@
 /* fieldedTable - a table composed of untyped strings in memory.  Includes names for each
  * field. This is a handy way of storing small-to-medium tab-separated files that begin
  * with a "#list of fields" line among other things. */
 
 /* Copyright (C) 2013 The Regents of the University of California 
  * See README in this or parent directory for licensing information. */
 
 #include "common.h"
 #include "localmem.h"
 #include "linefile.h"
 #include "hash.h"
 #include "fieldedTable.h"
+#include "net.h"
 
 struct fieldedTable *fieldedTableNew(char *name, char **fields, int fieldCount)
 /* Create a new empty fieldedTable with given name, often a file name. */
 {
 struct fieldedTable *table;
 AllocVar(table);
 struct lm *lm = table->lm = lmInit(0);
 table->name = lmCloneString(lm, name);
 table->cursor = &table->rowList;
 table->fieldCount = fieldCount;
 int i;
 char **row = lmAllocArray(lm, table->fields, fieldCount);
 for (i=0; i<fieldCount; ++i)
     {
     row[i] = lmCloneString(lm, fields[i]);
@@ -161,31 +162,31 @@
     }
 slReverse(&newList);
 table->rowList = newList;
 lmCleanup(&lm);
 }
 
 struct fieldedTable *fieldedTableFromTabFile(char *fileName, char *reportFileName, 
     char *requiredFields[], int requiredCount)
 /* Read table from tab-separated file with a #header line that defines the fields.  Ensures
  * all requiredFields (if any) are present.  The reportFileName is just used for error reporting and 
  * should be NULL for most purposes.  This is used by edwSubmit though which
  * first copies to a local file, and we want to report errors from the remote file. 
  * We do know the remote file exists at least, because we just copied it. */
 {
 /* Open file with fileName */
-struct lineFile *lf = lineFileOpen(fileName, TRUE);
+struct lineFile *lf = netLineFileOpen(fileName);
 
 /* Substitute in reportFileName for error reporting */
 if (reportFileName != NULL)
     {
     if (differentString(reportFileName, fileName))
         {
 	freeMem(lf->fileName);
 	lf->fileName = cloneString(reportFileName);
 	}
     }
 else
     {
     reportFileName = fileName;
     }