6babf4e94e3efb7bde638c7299c78272e2feef78 jcasper Wed Apr 12 16:17:03 2017 -0700 Fixing usage message after code review, refs #19212 diff --git src/hg/featureBits/featureBits.c src/hg/featureBits/featureBits.c index de33a58..3ad30c7 100644 --- src/hg/featureBits/featureBits.c +++ src/hg/featureBits/featureBits.c @@ -112,31 +112,31 @@ " :cds Break into coding exons\n" " :intron:N Break into introns, remove N from each end\n" " :utr5, :utr3 Break into 5' or 3' UTRs\n" " :upstream:N Consider the region of N bases before region\n" " :end:N Consider the region of N bases after region\n" " :score:N Consider records with score >= N \n" " :upstreamAll:N Like upstream, but doesn't filter out genes that \n" " have txStart==cdsStart or txEnd==cdsEnd\n" " :endAll:N Like end, but doesn't filter out genes that \n" " have txStart==cdsStart or txEnd==cdsEnd\n" "The tables can be bed, psl, or chain files, or a directory full of\n" "such files as well as actual database tables. To count the bits\n" "used in dir/chrN_something*.bed you'd do:\n" " featureBits database dir/_something.bed\n" "NB: by default, featureBits omits gap regions from its calculation of the total\n" - "number of bases. This requires a connecting to a database server using credentials\n" + "number of bases. This requires connecting to a database server using credentials\n" "from a .hg.conf file (or similar). If such a connection is not available, you will\n" "need to specify -countGaps (which skips the database connection) in addition to\n" "providing all tables as files or directories.\n" ); } static struct chromInfo *fbCreateChromInfoList(char *name, char *database) /* Load up all chromosome infos. */ { struct sqlConnection *conn = sqlConnect(database); struct sqlResult *sr = NULL; char **row; int loaded=0; struct chromInfo *ret = NULL; unsigned totalSize = 0;