82c4da4047101ecc794214c6d630e14e52c06fa8
markd
  Sun Apr 16 13:40:42 2017 -0700
fixed incorrect documentation in bigTransMap; gave one field a more meaninful name

diff --git src/hg/hgc/transMapClick.c src/hg/hgc/transMapClick.c
index d8dbafa..a768b36 100644
--- src/hg/hgc/transMapClick.c
+++ src/hg/hgc/transMapClick.c
@@ -110,31 +110,31 @@
 
 static struct bigTransMap *buildFakeBigTransMapRec(struct transMapInfo *info,
                                                    struct transMapSrc *src,
                                                    struct transMapGene *gene)
 /* build a partial bigTransMap record from the tables; only metadata fields
  * are filled in. */
 {
 struct bigTransMap *bigTransMap;
 AllocVar(bigTransMap);
 bigTransMap->seqType = 1;
 bigTransMap->name = cloneString(src->id);
 bigTransMap->srcDb = cloneString(src->db);
 bigTransMap->srcChrom = cloneString(src->chrom);
 bigTransMap->srcChromStart = src->chromStart;
 bigTransMap->srcChromEnd = src->chromEnd;
-bigTransMap->srcScore = (int)(1000.0*src->ident);
+bigTransMap->srcIdent = (int)(1000.0*src->ident);
 bigTransMap->srcAligned = (int)(1000.0*src->aligned);
 if (gene != NULL)
     {
     bigTransMap->geneName = cloneString(gene->geneName);
     bigTransMap->geneId = cloneString(gene->geneId);
     bigTransMap->oCDS = cloneString(gene->cds);
     }
 bigTransMap->geneType = cloneString(guessTranscriptType(gene)); // set for ESTs
 bigTransMap->transcriptType = cloneString(guessTranscriptType(gene));
 bigTransMap->chainType = cloneString(chainSubsetToBigStr(info->chainSubset));
 bigTransMap->commonName = hOrganism(info->srcDb);
 if (bigTransMap->commonName == NULL)
     bigTransMap->commonName = cloneString("");
 bigTransMap->scientificName = hScientificName(info->srcDb);
 if (bigTransMap->scientificName == NULL)
@@ -319,31 +319,31 @@
 // position
 printf("<TR CLASS=\"transMapLeft\"><TD>Position\n");
 printf("<TD CLASS=\"transMapNoWrap\">");
 if (bag->srcDbIsActive)
     printf("<A HREF=\"%s?db=%s&position=%s:%d-%d\" target=_blank>"
            "%s:%d-%d</A>",
            hgTracksName(), bag->meta->srcDb,
            bag->meta->srcChrom, bag->meta->srcChromStart, bag->meta->srcChromEnd,
            bag->meta->srcChrom, bag->meta->srcChromStart, bag->meta->srcChromEnd);
 else
     printf("%s:%d-%d", bag->meta->srcChrom, bag->meta->srcChromStart, bag->meta->srcChromEnd);
 printf("</TR>\n");
 
 // % identity and % aligned, values stored as 1000*fraction ident
 printf("<TR CLASS=\"transMapLeft\"><TD>Identity<TD>%0.1f%%</TR>\n",
-       bag->meta->srcScore/10.0);
+       bag->meta->srcIdent/10.0);
 printf("<TR CLASS=\"transMapLeft\"><TD>Aligned<TD>%0.1f%%</TR>\n",
        bag->meta->srcAligned/10.0);
 
 // gene and CDS
 printf("<TR CLASS=\"transMapLeft\"><TD>Gene<TD>%s</TR>\n",
        strOrNbsp(bag->meta->geneName));
 printf("<TR CLASS=\"transMapLeft\"><TD>Gene Id<TD>%s</TR>\n",
        strOrNbsp(bag->meta->geneId));
 printf("<TR CLASS=\"transMapLeft\"><TD>Gene Type<TD>%s</TR>\n",
        strOrNbsp(bag->meta->geneType));
 printf("<TR CLASS=\"transMapLeft\"><TD>Transcript Id<TD>%s</TR>\n",
        transMapIdToAcc(bag->meta->name));
 printf("<TR CLASS=\"transMapLeft\"><TD>Transcript Type<TD>%s</TR>\n",
        strOrNbsp(bag->meta->transcriptType));
 printf("<TR CLASS=\"transMapLeft\"><TD>CDS<TD>%s</TR>\n",