82c4da4047101ecc794214c6d630e14e52c06fa8
markd
  Sun Apr 16 13:40:42 2017 -0700
fixed incorrect documentation in bigTransMap; gave one field a more meaninful name

diff --git src/hg/inc/bigTransMap.h src/hg/inc/bigTransMap.h
index b4d0d3f..4030544 100644
--- src/hg/inc/bigTransMap.h
+++ src/hg/inc/bigTransMap.h
@@ -31,32 +31,32 @@
     unsigned oChromSize;	/* Size of other chromosome. */
     int *oChromStarts;	/* Start positions relative to oChromStart or from oChromStart+oChromSize depending on strand */
     char *oSequence;	/* Sequence on other chrom (or edit list, or empty) */
     char *oCDS;	/* CDS in NCBI format */
     unsigned chromSize;	/* Size of target chromosome */
     unsigned match;	/* Number of bases matched. */
     unsigned misMatch;	/*  Number of bases that don't match  */
     unsigned repMatch;	/*  Number of bases that match but are part of repeats  */
     unsigned nCount;	/*  Number of 'N' bases  */
     unsigned seqType;	/* 0=empty, 1=nucleotide, 2=amino_acid */
     char *srcDb;	/* source database */
     char *srcTransId;	/* source transcript id */
     char *srcChrom;	/* source chromosome */
     unsigned srcChromStart;	/* start position in source chromosome */
     unsigned srcChromEnd;	/* end position in source chromosome */
-    unsigned srcScore;	/* source source (faction identity * 1000) */
-    unsigned srcAligned;	/* fraction of source aligned (faction identity * 1000) */
+    unsigned srcIdent;	/* source score (fraction identity * 1000) */
+    unsigned srcAligned;	/* fraction of source transcript aligned (fraction aligned * 1000) */
     char *geneName;	/* gene name */
     char *geneId;	/* gene id */
     char *geneType;	/* gene type */
     char *transcriptType;	/* transcript type */
     char *chainType;	/* type of chains used for mapping */
     char *commonName;	/* common name */
     char *scientificName;	/* scientific name */
     char *orgAbbrev;	/* organism abbreviation */
     };
 
 struct bigTransMap *bigTransMapLoad(char **row);
 /* Load a bigTransMap from row fetched with select * from bigTransMap
  * from database.  Dispose of this with bigTransMapFree(). */
 
 struct bigTransMap *bigTransMapLoadAll(char *fileName);