82c4da4047101ecc794214c6d630e14e52c06fa8
markd
  Sun Apr 16 13:40:42 2017 -0700
fixed incorrect documentation in bigTransMap; gave one field a more meaninful name

diff --git src/hg/lib/bigTransMap.c src/hg/lib/bigTransMap.c
index 12de08c..4a0c28a 100644
--- src/hg/lib/bigTransMap.c
+++ src/hg/lib/bigTransMap.c
@@ -1,28 +1,28 @@
 /* bigTransMap.c was originally generated by the autoSql program, which also 
  * generated bigTransMap.h and bigTransMap.sql.  This module links the database and
  * the RAM representation of objects. */
 
 #include "common.h"
 #include "linefile.h"
 #include "dystring.h"
 #include "jksql.h"
 #include "bigTransMap.h"
 
 
 
-char *bigTransMapCommaSepFieldNames = "chrom,chromStart,chromEnd,name,score,strand,thickStart,thickEnd,reserved,blockCount,blockSizes,chromStarts,oChromStart,oChromEnd,oStrand,oChromSize,oChromStarts,oSequence,oCDS,chromSize,match,misMatch,repMatch,nCount,seqType,srcDb,srcTransId,srcChrom,srcChromStart,srcChromEnd,srcScore,srcAligned,geneName,geneId,geneType,transcriptType,chainType,commonName,scientificName,orgAbbrev";
+char *bigTransMapCommaSepFieldNames = "chrom,chromStart,chromEnd,name,score,strand,thickStart,thickEnd,reserved,blockCount,blockSizes,chromStarts,oChromStart,oChromEnd,oStrand,oChromSize,oChromStarts,oSequence,oCDS,chromSize,match,misMatch,repMatch,nCount,seqType,srcDb,srcTransId,srcChrom,srcChromStart,srcChromEnd,srcIdent,srcAligned,geneName,geneId,geneType,transcriptType,chainType,commonName,scientificName,orgAbbrev";
 
 struct bigTransMap *bigTransMapLoad(char **row)
 /* Load a bigTransMap from row fetched with select * from bigTransMap
  * from database.  Dispose of this with bigTransMapFree(). */
 {
 struct bigTransMap *ret;
 
 AllocVar(ret);
 ret->blockCount = sqlSigned(row[9]);
 ret->chrom = cloneString(row[0]);
 ret->chromStart = sqlUnsigned(row[1]);
 ret->chromEnd = sqlUnsigned(row[2]);
 ret->name = cloneString(row[3]);
 ret->score = sqlUnsigned(row[4]);
 safecpy(ret->strand, sizeof(ret->strand), row[5]);
@@ -49,31 +49,31 @@
 assert(sizeOne == ret->blockCount);
 }
 ret->oSequence = cloneString(row[17]);
 ret->oCDS = cloneString(row[18]);
 ret->chromSize = sqlUnsigned(row[19]);
 ret->match = sqlUnsigned(row[20]);
 ret->misMatch = sqlUnsigned(row[21]);
 ret->repMatch = sqlUnsigned(row[22]);
 ret->nCount = sqlUnsigned(row[23]);
 ret->seqType = sqlUnsigned(row[24]);
 ret->srcDb = cloneString(row[25]);
 ret->srcTransId = cloneString(row[26]);
 ret->srcChrom = cloneString(row[27]);
 ret->srcChromStart = sqlUnsigned(row[28]);
 ret->srcChromEnd = sqlUnsigned(row[29]);
-ret->srcScore = sqlUnsigned(row[30]);
+ret->srcIdent = sqlUnsigned(row[30]);
 ret->srcAligned = sqlUnsigned(row[31]);
 ret->geneName = cloneString(row[32]);
 ret->geneId = cloneString(row[33]);
 ret->geneType = cloneString(row[34]);
 ret->transcriptType = cloneString(row[35]);
 ret->chainType = cloneString(row[36]);
 ret->commonName = cloneString(row[37]);
 ret->scientificName = cloneString(row[38]);
 ret->orgAbbrev = cloneString(row[39]);
 return ret;
 }
 
 struct bigTransMap *bigTransMapLoadAll(char *fileName) 
 /* Load all bigTransMap from a whitespace-separated file.
  * Dispose of this with bigTransMapFreeList(). */
@@ -167,31 +167,31 @@
 s = sqlEatChar(s, ',');
 }
 ret->oSequence = sqlStringComma(&s);
 ret->oCDS = sqlStringComma(&s);
 ret->chromSize = sqlUnsignedComma(&s);
 ret->match = sqlUnsignedComma(&s);
 ret->misMatch = sqlUnsignedComma(&s);
 ret->repMatch = sqlUnsignedComma(&s);
 ret->nCount = sqlUnsignedComma(&s);
 ret->seqType = sqlUnsignedComma(&s);
 ret->srcDb = sqlStringComma(&s);
 ret->srcTransId = sqlStringComma(&s);
 ret->srcChrom = sqlStringComma(&s);
 ret->srcChromStart = sqlUnsignedComma(&s);
 ret->srcChromEnd = sqlUnsignedComma(&s);
-ret->srcScore = sqlUnsignedComma(&s);
+ret->srcIdent = sqlUnsignedComma(&s);
 ret->srcAligned = sqlUnsignedComma(&s);
 ret->geneName = sqlStringComma(&s);
 ret->geneId = sqlStringComma(&s);
 ret->geneType = sqlStringComma(&s);
 ret->transcriptType = sqlStringComma(&s);
 ret->chainType = sqlStringComma(&s);
 ret->commonName = sqlStringComma(&s);
 ret->scientificName = sqlStringComma(&s);
 ret->orgAbbrev = sqlStringComma(&s);
 *pS = s;
 return ret;
 }
 
 void bigTransMapFree(struct bigTransMap **pEl)
 /* Free a single dynamically allocated bigTransMap such as created
@@ -330,31 +330,31 @@
 fprintf(f, "%s", el->srcDb);
 if (sep == ',') fputc('"',f);
 fputc(sep,f);
 if (sep == ',') fputc('"',f);
 fprintf(f, "%s", el->srcTransId);
 if (sep == ',') fputc('"',f);
 fputc(sep,f);
 if (sep == ',') fputc('"',f);
 fprintf(f, "%s", el->srcChrom);
 if (sep == ',') fputc('"',f);
 fputc(sep,f);
 fprintf(f, "%u", el->srcChromStart);
 fputc(sep,f);
 fprintf(f, "%u", el->srcChromEnd);
 fputc(sep,f);
-fprintf(f, "%u", el->srcScore);
+fprintf(f, "%u", el->srcIdent);
 fputc(sep,f);
 fprintf(f, "%u", el->srcAligned);
 fputc(sep,f);
 if (sep == ',') fputc('"',f);
 fprintf(f, "%s", el->geneName);
 if (sep == ',') fputc('"',f);
 fputc(sep,f);
 if (sep == ',') fputc('"',f);
 fprintf(f, "%s", el->geneId);
 if (sep == ',') fputc('"',f);
 fputc(sep,f);
 if (sep == ',') fputc('"',f);
 fprintf(f, "%s", el->geneType);
 if (sep == ',') fputc('"',f);
 fputc(sep,f);