File Changes for hiram

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v349_preview2 to v349_base (2017-05-08 to 2017-05-15) v349

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src/hg/htdocs/images/hpv1.jpg
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  a3d4d044a2c0d48a13792ba44b781439b64dec6a Wed May 10 11:27:12 2017 -0700
  from: NIH National Cancer Institute via https://commons.wikimedia.org/wiki/File:Papilloma_virus_(hpv).jpg refs #18971
src/hg/htdocs/images/phylo/hpv1_47way.png
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  4b807dd1a1bde4abc5c02e3788aeadce8fc9e81d Sun May 14 22:07:01 2017 -0700
  47-way diagram for HPV1 refs #18971
src/hg/inc/versionInfo.h
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  ba9d5d0321eac8766a88194623cbd51b46b34d0d Mon May 15 09:59:09 2017 -0700
  New version number v349
src/hg/makeDb/crisprTrack/crisprAddGenome.py
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  a5f55498675912016c945acd791be4128341f350 Tue May 9 13:48:25 2017 -0700
  imported script from the git hub refs #18968
src/hg/makeDb/doc/aquChr2/initialBuild.txt
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  b6a22c9242b039dc11b4e30378dfbad356f0edf5 Tue May 9 15:26:40 2017 -0700
  adding blat servers refs #15096
src/hg/makeDb/doc/ci3/initialBuild.txt
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  9696526fdb03bf1abb90a0c6a91db36b0181db36 Tue May 9 11:19:33 2017 -0700
  adding blat servers refs #16628
src/hg/makeDb/doc/criGri1.txt
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  17d8c4c98bf3668bf19c8562ca36f11522e3ed32 Fri May 12 10:30:59 2017 -0700
  new default position from Regeneron recommendation refs #19228
src/hg/makeDb/doc/criGriChoV1/initialBuild.txt
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  3fd1fd8a1a68b38acdaad9ce8c44048d44ac06d8 Fri May 12 09:29:36 2017 -0700
  new default position recommendation from regeneron refs #19228
src/hg/makeDb/doc/hg19.txt
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  9c6973bc64e6f6d22bfe1d6afe5dec4f81fe4c2b Fri May 12 08:24:53 2017 -0700
  panTro5 hg19 chainNet per user request refs #19343
src/hg/makeDb/doc/hpv1/initialBuild.txt
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  3a340242689d5e3c1843c38a897f147f68e6fb72 Wed May 10 16:31:19 2017 -0700
  done with masking refs #18971
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  0334129bbf3460f87cde95e8e25eedcf7f440e22 Fri May 12 08:20:51 2017 -0700
  genbank loaded nothing ? refs #18971
src/hg/makeDb/doc/panTro5/lastzRuns.txt
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  9c6973bc64e6f6d22bfe1d6afe5dec4f81fe4c2b Fri May 12 08:24:53 2017 -0700
  panTro5 hg19 chainNet per user request refs #19343
src/hg/makeDb/genbank/etc/genbank.conf
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  88b767d53c72fb363d33b118dfe46cbe6450c931 Wed May 10 18:34:17 2017 -0700
  adding hpv1 Human papillomavirus type 90 - refs #18971
src/hg/makeDb/genbank/src/lib/gbGenome.c
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  88b767d53c72fb363d33b118dfe46cbe6450c931 Wed May 10 18:34:17 2017 -0700
  adding hpv1 Human papillomavirus type 90 - refs #18971
src/hg/makeDb/schema/all.joiner
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  84dba5bd375f9fe037ae695886b6ca82ce5cceb6 Mon May 8 10:24:36 2017 -0700
  adding chrPic2 rules and eliminate duplicate check for chainId refs #13166
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  a78ec0caef7d1fb397793f347bf6a5fb581de2bf Mon May 8 13:18:10 2017 -0700
  the chainId rule needs to be there causes duplicate checks refs #13166
src/hg/makeDb/trackDb/HPV/hpv1/description.html
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  67dc46bec08d36858fd06f48a6c8735812e2c44d Wed May 10 11:41:04 2017 -0700
  initial files from makeGenomeDb.pl refs #18971
src/hg/makeDb/trackDb/HPV/hpv1/gap.html
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  67dc46bec08d36858fd06f48a6c8735812e2c44d Wed May 10 11:41:04 2017 -0700
  initial files from makeGenomeDb.pl refs #18971
src/hg/makeDb/trackDb/HPV/hpv1/gold.html
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  67dc46bec08d36858fd06f48a6c8735812e2c44d Wed May 10 11:41:04 2017 -0700
  initial files from makeGenomeDb.pl refs #18971
src/hg/makeDb/trackDb/HPV/hpv1/trackDb.ra
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  67dc46bec08d36858fd06f48a6c8735812e2c44d Wed May 10 11:41:04 2017 -0700
  initial files from makeGenomeDb.pl refs #18971
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  a76c2ddec0804734fc3c2cfa1bce1b567456a2e0 Wed May 10 13:17:45 2017 -0700
  add gold search rule refs #18971
src/hg/makeDb/trackDb/criGri/criGri1/trackDb.ra
- lines changed 33, context: html, text, full: html, text
  1f0b027a3b27bb19bbf97cc3381e17e1ca4be6b2 Fri May 12 09:51:53 2017 -0700
  reset default visibilities on recommendation from Regeneron refs #19228
src/hg/makeDb/trackDb/criGri/criGriChoV1/trackDb.ra
- lines changed 19, context: html, text, full: html, text
  1f0b027a3b27bb19bbf97cc3381e17e1ca4be6b2 Fri May 12 09:51:53 2017 -0700
  reset default visibilities on recommendation from Regeneron refs #19228
src/hg/utils/automation/doBlastzChainNet.pl
- lines changed 9, context: html, text, full: html, text
  0aadfe099a9b23771fb238be21aa8c31bb82cf9a Fri May 12 09:22:09 2017 -0700
  changing blastz to lastz on README references refs #19343
src/hg/utils/automation/makeGenomeDb.pl
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  8f070a0b99b2a397d2be0215198089930272cf6f Wed May 10 11:39:13 2017 -0700
  eliminate bogus </I> tag refs #18971
src/hg/utils/refreshNamedSessionCustomTracks/refreshNamedSessionCustomTracks.c
- lines changed 14, context: html, text, full: html, text
  1dbb921507c9f41988f5b9a8f806eddeca1de6e0 Tue May 9 10:48:54 2017 -0700
  recognize hgComposite trash files and no need to read files to touch them refs #11630
src/utils/qa/weeklybld/buildEnv.csh
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  863b311f26403a3d457d75a732d8c69a55bb4bbb Mon May 15 09:58:18 2017 -0700
  v349 final build refs #19342
src/utils/qa/weeklybld/doHgNearTestRobot.csh
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  dcd8fb5432eb66de1dcfe8de0486153cfeb63025 Tue May 9 14:50:45 2017 -0700
  there is no email address for USER@soe.ucsc.edu so eliminate that from mail commands no redmine
src/utils/qa/weeklybld/doHgTablesTestRobot.csh
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  dcd8fb5432eb66de1dcfe8de0486153cfeb63025 Tue May 9 14:50:45 2017 -0700
  there is no email address for USER@soe.ucsc.edu so eliminate that from mail commands no redmine
src/utils/qa/weeklybld/doLiftOverTestRobot.csh
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  dcd8fb5432eb66de1dcfe8de0486153cfeb63025 Tue May 9 14:50:45 2017 -0700
  there is no email address for USER@soe.ucsc.edu so eliminate that from mail commands no redmine
src/utils/qa/weeklybld/doNewReview.csh
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  dcd8fb5432eb66de1dcfe8de0486153cfeb63025 Tue May 9 14:50:45 2017 -0700
  there is no email address for USER@soe.ucsc.edu so eliminate that from mail commands no redmine
src/utils/qa/weeklybld/doNewReview2.csh
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  dcd8fb5432eb66de1dcfe8de0486153cfeb63025 Tue May 9 14:50:45 2017 -0700
  there is no email address for USER@soe.ucsc.edu so eliminate that from mail commands no redmine
src/utils/qa/weeklybld/doTrackCheckRobot.csh
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  dcd8fb5432eb66de1dcfe8de0486153cfeb63025 Tue May 9 14:50:45 2017 -0700
  there is no email address for USER@soe.ucsc.edu so eliminate that from mail commands no redmine
src/utils/qa/weeklybld/makeStrictBeta.csh
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  1044a6388a242b7007db966548bd8fc3e713407b Tue May 9 14:53:33 2017 -0700
  there is no email address for USER@soe.ucsc.edu so eliminate that from mail commands no redmine
src/utils/qa/weeklybld/moveBranchTag.csh
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  1044a6388a242b7007db966548bd8fc3e713407b Tue May 9 14:53:33 2017 -0700
  there is no email address for USER@soe.ucsc.edu so eliminate that from mail commands no redmine

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