7f5a39fa7ecbf668c7ec0cc077dc7b7821fae06c max Thu May 11 15:27:16 2017 -0700 adding .as files for interactions tracks, refs #13634 diff --git src/hg/lib/ggLink.as src/hg/lib/ggLink.as new file mode 100644 index 0000000..e3c9210 --- /dev/null +++ src/hg/lib/ggLink.as @@ -0,0 +1,14 @@ +table ggLink +" hgcGeneGraph links between genes and enough info to draw a graph" + ( + string gene1 index; "Gene pair, symbol1 (first in alphabet)" + string gene2 index; "Gene pair, symbol2 (second in alphabet)" + string linkTypes; "comma-sep list of pwy (=pathway),ppi (=ppi-db), text. If ppi or pwy: low if low-throughput assay" + int pairCount; "text mining document count in gene1->gene2 direction " + int oppCount; "text mining document count in gene2->gene1 direction " + int docCount; " text mining document count for both directions " + string dbList; "|-separated list of databases that have curated this gene pair" + int minResCount; "minimum number of interactions assigned to any paper supporting this interaction. If this value is lower than X, the interaction is considered low-throughput-supported." + lstring snippet; "if linkType contains 'text': selected sentence from text-mined results" + lstring context; "select document contexts (e.g. diseases or pathways)" + )