Commits for hiram

v349_preview to v349_preview2 (2017-05-01 to 2017-05-08) v349

b895408e8689768bc133e3940cad6e22eb6e55a3 Mon May 1 11:32:33 2017 -0700

• document lastz/chainNet runs between falPer1, geoFor1, galGao5 and melGal5 refs #15096
  • src/hg/makeDb/doc/falPer1.txt - lines changed 27, context: html, text, full: html, text
  • src/hg/makeDb/doc/galGal5/lastzRuns.txt - lines changed 84, context: html, text, full: html, text
  • src/hg/makeDb/doc/geoFor1.txt - lines changed 27, context: html, text, full: html, text
  • src/hg/makeDb/doc/melGal5/lastzRuns.txt - lines changed 143, context: html, text, full: html, text

ba069899569331408e747ac80e04aeb2535e3119 Tue May 2 11:19:18 2017 -0700

• starting 11-way conservation track refs #19151
  • src/hg/makeDb/trackDb/xenTro/xenTro9/cons11way.html - lines changed 430, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/xenTro/xenTro9/trackDb.11way.ra - lines changed 102, context: html, text, full: html, text

f4cacabb4a338e580925100cbd8e32951c049d0c Tue May 2 11:21:32 2017 -0700

• starting 11-way conservation track refs #19151
  • src/hg/makeDb/doc/xenTro9/multiz11way.txt - lines changed 1551, context: html, text, full: html, text

13d2c4facad57a5f7a52735c887a193ee728f1ec Tue May 2 16:06:38 2017 -0700

• working on download documents refs #19151
  • src/hg/makeDb/doc/xenTro9/multiz11way.txt - lines changed 330, context: html, text, full: html, text

7c68ef88e7e6e24487c569ed98548dacd20407ed Tue May 2 17:16:46 2017 -0700

• completed xenTro9 11-way multiz refs #19151
  • src/hg/makeDb/doc/xenTro9/multiz11way.txt - lines changed 38, context: html, text, full: html, text

cc3d9c426f37bfea013408fcf3d14f546cce0d71 Wed May 3 09:36:47 2017 -0700

• adding aquChr2 chainNet refs #15096
  • src/hg/makeDb/trackDb/trackDb.chainNet.birds.ra - lines changed 59, context: html, text, full: html, text

178ac45080c1c1389ddf7088c7aed96e5f565e98 Wed May 3 10:12:48 2017 -0700

• remove caroli and pahari, incorrect assemblies, refs #13553
  • src/hg/makeDb/doc/mouseStrains/hubIndex.html - lines changed 43, context: html, text, full: html, text
  • src/hg/makeDb/doc/mouseStrains/makefile - lines changed 11, context: html, text, full: html, text
  • src/hg/makeDb/doc/mouseStrains/mouseStrains.genomes.txt - lines changed 25, context: html, text, full: html, text

6d4369ec871bba9f9889b3a97cb7accac6f4904d Wed May 3 15:42:11 2017 -0700

• need to cgiDecode the dataPt to detect the multi region files refs #17358
  • src/hg/utils/refreshNamedSessionCustomTracks/refreshNamedSessionCustomTracks.c - lines changed 2, context: html, text, full: html, text

f539ae993f701e834ae8a57865b60b88785a1a00 Thu May 4 13:52:21 2017 -0700

• setting viewLimits for phyloP refs #19151
  • src/hg/makeDb/trackDb/xenTro/xenTro9/trackDb.11way.ra - lines changed 4, context: html, text, full: html, text

8878c78f2453d94e3853edf42f03260720cd8304 Mon May 8 09:43:11 2017 -0700

• wrap up lastz/chainNet runs to xentro9 refs #19151
  • src/hg/makeDb/doc/monDom5.txt - lines changed 17, context: html, text, full: html, text
  • src/hg/makeDb/doc/xenTro9/lastzRuns.txt - lines changed 166, context: html, text, full: html, text

5ac2f527434d4a64f5c1598d34406a6148781098 Mon May 8 09:49:46 2017 -0700

• do not need release alpha on aquChr2 lastz/chainNet refs #15096
  • src/hg/makeDb/trackDb/trackDb.chainNet.birds.ra - lines changed 5, context: html, text, full: html, text

160666320fb932336184de867eff5147b797079e Mon May 8 10:01:34 2017 -0700

• v349 preview2 refs #19342'
  • src/utils/qa/weeklybld/buildEnv.csh - lines changed 2, context: html, text, full: html, text