Commits for hiram

v350_preview2 to v350_base (2017-05-29 to 2017-06-05) v350

eedb43ce075e8caba280bad4507b477d84f434aa Fri May 26 20:01:55 2017 -0700

• fixup usage message for kmerPrint.pl refs #19450
  • src/hg/utils/automation/doTandemDup.pl - lines changed 2, context: html, text, full: html, text
  • src/hg/utils/automation/kmerPrint.pl - lines changed 1, context: html, text, full: html, text

f720a1886d0e56e134f32d3f2c6b168027c02b4d Tue May 30 14:14:59 2017 -0700

• turn on NCBI RefSeq composite track ready for QA refs #18997
  • src/hg/makeDb/trackDb/mouse/mm10/trackDb.ra - lines changed 2, context: html, text, full: html, text

feee9fb437652a80d3439c22c8ce5d6669b95d41 Tue May 30 15:11:20 2017 -0700

• clean up featureBits and pslCheck for ncbiRefSeq track refs #18997
  • src/hg/makeDb/doc/mm10.txt - lines changed 91, context: html, text, full: html, text

4f2f38aa1f1493c1f374a4408d5f126155448f2b Thu Jun 1 13:59:51 2017 -0700

• adding v89 listings refs #19526
  • src/hg/utils/automation/EnsGeneAutomate.pm - lines changed 269, context: html, text, full: html, text

21f21b680a87dd29fe29ac63945d256a78102748 Fri Jun 2 10:38:23 2017 -0700

• WikiMedia Commons: Dr. Graham Beards refs #19533
  • src/hg/htdocs/images/hbv1.jpg - lines changed 0, context: html, text, full: html, text (a binary file or whitespace-only change shows no diff)

2795f6243d87343bb5ad075b26e173499332ca1b Fri Jun 2 10:45:12 2017 -0700

• initial files from makeGenomeDb.pl refs #19533
  • src/hg/makeDb/trackDb/HBV/hbv1/description.html - lines changed 64, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/HBV/hbv1/gap.html - lines changed 29, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/HBV/hbv1/gold.html - lines changed 33, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/HBV/hbv1/trackDb.ra - lines changed 8, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/makefile - lines changed 1, context: html, text, full: html, text

0b1372f0d80b7cf84f7fb4ffedf5fd7be50c032c Fri Jun 2 10:55:31 2017 -0700

• adding gold search rule refs #19533
  • src/hg/makeDb/trackDb/HBV/hbv1/trackDb.ra - lines changed 5, context: html, text, full: html, text

e213343353ff9a815bb331d87494c5ffb992569d Fri Jun 2 11:27:34 2017 -0700

• adding hbv1 Hepatitis B virus - refs #19533
  • src/hg/makeDb/genbank/etc/genbank.conf - lines changed 19, context: html, text, full: html, text
  • src/hg/makeDb/genbank/src/lib/gbGenome.c - lines changed 2, context: html, text, full: html, text

4a0f96d37d88cd9d5d041d9af59330f99c16c22f Sat Jun 3 09:53:10 2017 -0700

• trying mrna.xeno on hbv1 to see what loads refs #19533
  • src/hg/makeDb/genbank/etc/genbank.conf - lines changed 5, context: html, text, full: html, text

13023473a24aa1ba3dacfe08d667502941c838c0 Mon Jun 5 10:28:34 2017 -0700

• v350 final build refs #19473
  • src/utils/qa/weeklybld/buildEnv.csh - lines changed 3, context: html, text, full: html, text

b75b79c29bfa4b7ddfd08654d4e26b944de26dc6 Mon Jun 5 10:29:06 2017 -0700

• New version number v350
  • src/hg/inc/versionInfo.h - lines changed 1, context: html, text, full: html, text