Commits for kent

v350_preview2 to v350_base (2017-05-29 to 2017-06-05) v350

72d331125b6436857a882ac41a4588810da20651 Fri May 26 14:36:55 2017 -0700

• Adding new utility to collapse fields with same name into a single comma-separated field.
  • src/tabFile/makefile - lines changed 3, context: html, text, full: html, text
  • src/tabFile/tabRepeatedFieldsToArrayField/expected.out - lines changed 5, context: html, text, full: html, text
  • src/tabFile/tabRepeatedFieldsToArrayField/makefile - lines changed 3, context: html, text, full: html, text
  • src/tabFile/tabRepeatedFieldsToArrayField/tabRepeatedFieldsToArrayField.c - lines changed 139, context: html, text, full: html, text
  • src/tabFile/tabRepeatedFieldsToArrayField/test.in - lines changed 4, context: html, text, full: html, text

5d4616290454b29ef09230e5332b086ba5dea764 Fri May 26 14:38:30 2017 -0700

• Adding a little verbose diagnostic message.
  • src/tabFile/tabRepeatedFieldsToArrayField/tabRepeatedFieldsToArrayField.c - lines changed 4, context: html, text, full: html, text

6a91b99fc3df6010238394485667d076310d502e Sat May 27 12:58:01 2017 -0700

• Converter from geo soft files to something easier for us to deal with.
  • src/hca/reformat/geoSoftToRaDir/geoSoftToRaDir.c - lines changed 181, context: html, text, full: html, text
  • src/hca/reformat/geoSoftToRaDir/makefile - lines changed 3, context: html, text, full: html, text

444eadfd092a6813d4d9fd8991a3d3e1776c2e93 Sat May 27 13:12:48 2017 -0700

• Changing handling of data_processing from array to separate tags with a numerical suffix.
  • src/hca/reformat/geoSoftToRaDir/geoSoftToRaDir.c - lines changed 44, context: html, text, full: html, text

3dfc14978b8284e72c0585737bd748941bf260bb Mon May 29 15:55:00 2017 -0700

• Making utility to go from GEO soft file to a three level tag storm
  • src/hca/reformat/geoToTagStorm/geoToTagStorm.c - lines changed 196, context: html, text, full: html, text
  • src/hca/reformat/geoToTagStorm/makefile - lines changed 3, context: html, text, full: html, text

d97205bb3891dca78de17e0d94e6e614b586c55d Mon May 29 18:59:52 2017 -0700

• Removing some useless tags, and simplifying ones that appear at several levels to a single unprefixed tag.
  • src/hca/reformat/geoToTagStorm/geoToTagStorm.c - lines changed 112, context: html, text, full: html, text

093a3424a93c80ebaf1cfd9cb0546828920f67fb Mon May 29 19:05:13 2017 -0700

• Moving some useful stuff to library.
  • src/hca/reformat/geoToTagStorm/geoToTagStorm.c - lines changed 82, context: html, text, full: html, text

52b344f174fdc221794197c3117f72c0972ce375 Mon May 29 21:56:02 2017 -0700

• Adding array indexes to multi-tags. Adding to subs list. Removing data_processing special case.
  • src/hca/reformat/geoToTagStorm/geoToTagStorm.c - lines changed 93, context: html, text, full: html, text

52e0757df85856092b1311bad3190a7e71e326e2 Tue May 30 13:56:27 2017 -0700

• Adding some geo/hca renames.
  • src/hca/reformat/geoToTagStorm/geoToHca.remove - lines changed 20, context: html, text, full: html, text
  • src/hca/reformat/geoToTagStorm/geoToHca.rename - lines changed 40, context: html, text, full: html, text

bce8502f7c0ec3b1ae0e5d336fee5835d49984f6 Tue May 30 18:12:27 2017 -0700

• Adding csv module.
  • src/tagStorm/tagStormArrayToCsv/makefile - lines changed 3, context: html, text, full: html, text
  • src/tagStorm/tagStormArrayToCsv/tagStormArrayToCsv.c - lines changed 147, context: html, text, full: html, text

a7e4140d8466c8dee5118c7480f4b116072cd7b1 Tue May 30 18:12:50 2017 -0700

• Adding csv module.
  • src/inc/csv.h - lines changed 17, context: html, text, full: html, text
  • src/lib/csv.c - lines changed 62, context: html, text, full: html, text
  • src/lib/makefile - lines changed 1, context: html, text, full: html, text

2de6d7adfd3e3252d093e162a8e953b4fc36d10a Tue May 30 18:14:21 2017 -0700

• Adding to tagStorm utilities build.
  • src/tagStorm/makefile - lines changed 4, context: html, text, full: html, text

5f2a0e390ae8a849b5d987fbcd86d8dda453c14c Tue May 30 18:15:29 2017 -0700

• Adding two functions that build hashes out of arrays of strings.
  • src/inc/hash.h - lines changed 6, context: html, text, full: html, text
  • src/lib/hash.c - lines changed 21, context: html, text, full: html, text

ea844c8ebc1c3bf693b81e5ba1f6a08c8bd46aa8 Tue May 30 18:17:10 2017 -0700

• Adding some functions for editing tagStorms, either deleting all tags of a given name or renaming them.
  • src/inc/tagStorm.h - lines changed 25, context: html, text, full: html, text
  • src/lib/tagStorm.c - lines changed 96, context: html, text, full: html, text

0c33463d9eea1c6cfa5b641de752b05d517c9b64 Tue May 30 18:18:04 2017 -0700

• Moving useful function to csv module in library.
  • src/tabFile/tabRepeatedFieldsToArrayField/tabRepeatedFieldsToArrayField.c - lines changed 34, context: html, text, full: html, text

c2dda7acfe760d9723e350f5a0bb60814fd1b9cf Tue May 30 18:20:02 2017 -0700

• Making series a child of top rather than merging fields.
  • src/hca/reformat/geoToTagStorm/geoToTagStorm.c - lines changed 14, context: html, text, full: html, text

d2e0a48caf4f5bacc50391fb4beb757b7f9634c7 Tue May 30 18:20:49 2017 -0700

• Adding a few more tags not needed in hca.
  • src/hca/reformat/geoToTagStorm/geoToHca.delete - lines changed 23, context: html, text, full: html, text
  • src/hca/reformat/geoToTagStorm/geoToHca.remove - lines changed 20, context: html, text, full: html, text