Commits for markd

v350_preview2 to v350_base (2017-05-29 to 2017-06-05) v350

5017a9ca5894a90ea4f50f3979c76b3bcf7b6b13 Wed May 31 13:33:48 2017 -0700

• removed status about current release, as UCSC browser might be behind
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeGencodeSuper.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg38/wgEncodeGencodeSuper.html - lines changed 1, context: html, text, full: html, text

34ca9a98d8d7667085278ce2f91e78d5912f66fa Wed May 31 14:17:34 2017 -0700

• load of GENCODE VM14
  • src/hg/makeDb/doc/mm10.txt - lines changed 30, context: html, text, full: html, text
  • src/hg/makeDb/outside/gencode/gencodeLoad.mk - lines changed 6, context: html, text, full: html, text
  • src/hg/makeDb/schema/all.joiner - lines changed 91, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/mouse/mm10/trackDb.ra - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/mouse/mm10/wgEncodeGencodeSuper.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/mouse/mm10/wgEncodeGencodeVM13.ra - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/mouse/mm10/wgEncodeGencodeVM14.html - lines changed 30, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/mouse/mm10/wgEncodeGencodeVM14.ra - lines changed 266, context: html, text, full: html, text

f7792e45d8c710b375ed418f55f759a13c545421 Thu Jun 1 23:11:14 2017 -0700

• Moved guts of genePredToProt to library to allow Brian to use it in CGIs. Removed unnecessary PSL creation from genePredToProt.
  • src/hg/inc/genePred.h - lines changed 16, context: html, text, full: html, text
  • src/hg/lib/genePred.c - lines changed 155, context: html, text, full: html, text
  • src/hg/utils/genePredToProt/genePredToProt.c - lines changed 226, context: html, text, full: html, text
  • src/hg/utils/genePredToProt/tests/expected/refSeqSuffixTest.cds.psl - lines changed 25, context: html, text, full: html, text
  • src/hg/utils/genePredToProt/tests/expected/refSeqTest.cds.psl - lines changed 25, context: html, text, full: html, text
  • src/hg/utils/genePredToProt/tests/makefile - lines changed 42, context: html, text, full: html, text