5576f303e5975afc8c096289bbe58231bc0afc7d
max
  Fri Jun 2 11:25:35 2017 -0700
fixing biocarta links, refs #13634

diff --git src/hg/hgGeneGraph/hgGeneGraph src/hg/hgGeneGraph/hgGeneGraph
index a796fb2..598f51e 100755
--- src/hg/hgGeneGraph/hgGeneGraph
+++ src/hg/hgGeneGraph/hgGeneGraph
@@ -94,30 +94,31 @@
 GGDB="hgFixed"
 
 # ==== GLOBALS =====
 
 # CGI parameters as a FieldStorage object
 # args = None
 
 # external DB information
 dbData = {
 "kegg" : ("KEGG", "http://www.kegg.jp/kegg-bin/show_pathway?%s"),
 "wikipathways" : ("WikiPathways", "http://www.wikipathways.org/index.php/Pathway:%s"),
 "iref" : ("Iref", "http://wodaklab.org/iRefWeb/interaction/show/%s"),
 #"pid" : ("NCI Pathway Database", "http://pid.nci.nih.gov/search/InteractionPage?atomid=%s"),
 #PID server is down, linking to NDex now, adapted the IDs, see ggPidToTables
 "pid" : ("NCI Pathway Database", "http://www.ndexbio.org/#/search?searchType=All&searchString=labels%%253A%s"),
+"biocarta" : ("BioCarta", "https://cgap.nci.nih.gov/Pathways/BioCarta/%s"),
 "reactome" : ("Reactome", "http://www.reactome.org/content/detail/%s"),
 "go" : ("Gene Ontology Complexes", "http://www.ebi.ac.uk/QuickGO/GTerm?id=%s#info=2"),
 "fastforward" : ("FastForward", "http://fastforward.sys-bio.net/popup.php?name_target=%s"),
 "argdb" : ("ARGDB", "http://argdb.fudan.edu.cn/geneshow_id.php?gene_id=%s"),
 "corum" : ("MIPS CORUM", "http://mips.helmholtz-muenchen.de/genre/proj/corum/complexdetails.html?id=%s"),
 "string" : ("STRING", "http://string-db.org/newstring_cgi/show_network_section.pl?multiple_input_items=%s&multi_input=1&multiple_input_type=multi_identifier&limit=0&input_page_type=multiple_identifiers&have_user_input=2&species_text=Homo%%20sapiens&input_query_species=auto_detect&flash=15&required_score=400")
 }
 
 # mime types to send in http header for other downloads
 mimeTypes = {
 "svg" : "image/svg+xml",
 "pdf" : "application/pdf",
 "json" : "application/json",
 "sif" : "application/octet-stream"
 }
@@ -1482,30 +1483,31 @@
             relType, relSubtype, sourceDb, sourceId, sourceDesc, docIds = row
 
         if eventId.startswith("ppi_"):
             isPpi = True
         else:
             isPpi = False
 
         docSet = set(docIds.split("|"))
 
         if eventId.startswith("ppi_iref"):
             dbName, dbUrlPat = dbData["iref"]
             dbName = "IRef %s" % sourceDb.capitalize()
         else:
             dbName, dbUrlPat = dbData[sourceDb]
 
+
         url = dbUrlPat % sourceId
 
         print "<li>"
         if sourceDesc=="":
             if isPpi:
                 sourceDesc = "Interaction"
             else:
                 sourceDesc = "Reaction"
 
         print '%s <a href="%s" target="_BLANK">%s</a>: ' % (dbName, url, sourceDesc)
 
         print entToDesc(causeType, causeName, causeGenes)
 
         if themeGenes!="":
             if isPpi: