71495d97a500eb0b1f176584e677c0d3965bf9ae
max
Fri Jun 2 17:22:25 2017 -0700
improving layout of evidence a bit, refs #13634
diff --git src/hg/hgGeneGraph/hgGeneGraph src/hg/hgGeneGraph/hgGeneGraph
index 3d97dfd..c463d06 100755
--- src/hg/hgGeneGraph/hgGeneGraph
+++ src/hg/hgGeneGraph/hgGeneGraph
@@ -1479,46 +1479,50 @@
if isPpi:
sourceDesc = "Interaction"
else:
sourceDesc = "Reaction"
print '%s %s: ' % (dbName, url, sourceDesc)
print entToDesc(causeType, causeName, causeGenes)
if themeGenes!="":
if isPpi:
print "—" # unicode long dash
else:
print "→" # Unicode Arrow
- print entToDesc(themeType, themeName, themeGenes)
+ desc = entToDesc(themeType, themeName, themeGenes)
+ print desc
if relType!="" or relSubtype!="":
if relType!="" and relSubtype!="":
print "(%s/%s)" % (relType, relSubtype)
elif relType!="":
print "(%s)" % (relType)
elif relSubtype!="":
print "(%s)" % (relSubtype)
- if evidence!="":
- print ", Evidence: ", evidence.replace("|", ", ").replace("_", " ")
-
if onlyDoc==None and len(docSet)!=0:
+ if len(desc)>25:
+ print "
"
print prettyDocLinks(conn, sorted(docSet))
+ if evidence!="" and evidence!="unknown":
+ print "
Evidence: ", evidence.replace("|", ", ").replace("_", " "), ""
+
+
print ""
print ""
def showPwyPpiInfo(conn, gene1, gene2):
" print pathway and PPI info about link "
gene1, gene2 = sorted([gene1, gene2])
q = "SELECT ggEventDb.* FROM ggLinkEvent, ggEventDb " \
"WHERE gene1='%s' and gene2='%s' AND ggEventDb.eventId=ggLinkEvent.eventId" % (gene1,gene2)
rows = sqlQuery(conn, q)
# split db rows into ppi and pathway rows
pwyRows, ppiRows = [], []
for r in rows:
if r[0].startswith("ppi_"):