884a11762453d7f4141aed366f3d1eaa2a428a20 max Sun Jun 4 23:59:50 2017 -0700 a few more fixes for openbel and gpml, refs #13634 diff --git src/hg/hgGeneGraph/hgGeneGraph src/hg/hgGeneGraph/hgGeneGraph index 94ae679..955c1c9 100755 --- src/hg/hgGeneGraph/hgGeneGraph +++ src/hg/hgGeneGraph/hgGeneGraph @@ -1486,31 +1486,31 @@ print entToDesc(causeType, causeName, causeGenes) desc = "" if themeGenes!="": if isPpi: print "—" # unicode long dash else: print "→" # Unicode Arrow desc = entToDesc(themeType, themeName, themeGenes) print desc if relType!="" or relSubtype!="": if relType!="" and relSubtype!="": - print "(%s/%s)" % (relType, relSubtype) + print "(%s, %s)" % (relType, relSubtype) elif relType!="": print "(%s)" % (relType) elif relSubtype!="": print "(%s)" % (relSubtype) if onlyDoc==None and len(docSet)!=0: if len(desc)>25: print "
" print prettyDocLinks(conn, sorted(docSet)) if evidence!="" and evidence!="unknown": print "
Evidence: ", evidence.replace("|", ", ").replace("_", " "), "" print "" @@ -1946,30 +1946,31 @@ for g1 in row.causeGenes.split("|"): for g2 in row.themeGenes.split("|"): pair = tuple(sorted([g1, g2])) pairToPmids[pair].add(row.docId) pairs["literome"].add(pair) for pair, pmids in pairToPmids.iteritems(): if len(pmids)>1: pairs["literome (>= 2 PMIDs)"].add(pair) return pairs def showStats(): " " print "

Databases - number of unique pairs

" print "" def htmlMiddle(): " print html middle part " sys.stdout.flush() flag = getCgiVar("flag") if flag!=None: flagInteraction(flag) exit(0)