85bd10da37f403d155c4434d90edcd146e682948
braney
  Mon May 15 13:03:32 2017 -0700
add sorting to composite wiggles.

diff --git src/optimalLeaf/makefile src/optimalLeaf/makefile
new file mode 100644
index 0000000..38a28b2
--- /dev/null
+++ src/optimalLeaf/makefile
@@ -0,0 +1,53 @@
+kentSrc = ..
+include ../inc/localEnvironment.mk
+include ../inc/common.mk
+
+#***********************************************************************
+# File : makefile
+#************************************************************************
+
+
+CC= g++
+SRC= Tree.cc Leaf.cc readFile.cc SimMat.cc bestArr.cc
+O= Tree.o Leaf.o readFile.o SimMat.o bestArr.o 
+CFLAGS= -g 
+
+
+#all: ${OBJ}
+#	${CC} ${CFLAGS} ${OBJ} -lm -o arrange
+#
+
+../lib/$(MACHTYPE)/optimalLeaf.a: $(O) $(MACHTYPE)
+	ar rcus ../lib/$(MACHTYPE)/optimalLeaf.a $(O)
+
+$(MACHTYPE):
+	mkdir $(MACHTYPE)
+
+Leaf.o : Leaf.cc Leaf.hh 
+	${CC} -c  ${CFLAGS}  Leaf.cc
+
+Tree.o : Tree.cc Tree.hh Leaf.hh
+	${CC} -c  ${CFLAGS}  Tree.cc
+
+readFile.o : readFile.cc readFile.hh 
+	${CC} -c  ${CFLAGS}  readFile.cc
+
+SimMat.o : SimMat.cc SimMat.hh readFile.hh 
+	${CC} -c  ${CFLAGS}  SimMat.cc
+
+bestArr.o : bestArr.cc  Tree.hh SimMat.hh
+	${CC} -c  ${CFLAGS}  bestArr.cc
+
+#***********************************************************************
+#                         EOF
+#**********************************************************************
+
+
+
+
+
+
+
+
+
+# DO NOT DELETE