56da8a5745b1ef79c8087ab53e3590e4395d0751
hiram
  Thu May 18 11:34:20 2017 -0700
catch up checkin no redmine

diff --git src/utils/ncbi/cytoBandVerify.pl src/utils/ncbi/cytoBandVerify.pl
index 5a08e6f..0811e8b 100755
--- src/utils/ncbi/cytoBandVerify.pl
+++ src/utils/ncbi/cytoBandVerify.pl
@@ -34,30 +34,30 @@
     if ($start < 0) {
 	printf STDERR "start < 0 at %s\n", $line;
 	++$errors;
     }
     if ($end > $chromInfo{$chr}) {
 	printf STDERR "end > %d at %s\n", $chromInfo{$chr}, $line;
 	++$errors;
     }
     $zeros{$chr} = 1 if (0 == $start);
     $ends{$chr} = 1 if ($chromInfo{$chr} == $end);
 }
 
 my $chrCount = 0;
 #  all zeros and ends covered ?
 foreach my $chr (sort (keys %chromInfo)) {
-    next if ($chr =~ m/random/);
-    next if ($chr =~ m/chrM/);
-    next if ($chr =~ m/chrUn/);
+#    next if ($chr =~ m/random/);
+#    next if ($chr =~ m/chrM/);
+#    next if ($chr =~ m/chrUn/);
     if (!exists($zeros{$chr})) {
 	printf STDERR "no zero coordinate on chrom %s\n", $chr;
 	++$errors;
     }
     if (!exists($ends{$chr})) {
 	printf STDERR "no end coordinate on chrom %s\n", $chr;
 	++$errors;
     }
     ++$chrCount;
 }
 
 print "everything checks out OK on $chrCount chroms\n" if ($errors == 0);