c131ed83cd627d80bd614262fc7d03e8f6d48ea6 max Fri May 19 13:54:04 2017 -0700 improving gene graph .as files a little diff --git src/hg/lib/ggEventText.as src/hg/lib/ggEventText.as index a91b0aa..575a232 100644 --- src/hg/lib/ggEventText.as +++ src/hg/lib/ggEventText.as @@ -1,21 +1,21 @@ table ggEventText -" hgcGeneGraph details of text-mined interactions; a cause influences a theme. Both can be a gene, gegen complex or gene family. " +" An interaction between two proteins as extracted by a text mining pipeline. Has a single document ID (PMID) and includes the sentence and the tokens (words) where the interaction was found." ( string eventId; "ID of interaction description" string causeType; "type of cause of interaction, values: complex, gene or family" string causeName; "name of cause, as used in text" lstring causeGenes; "HGNC gene symbols of cause, comma-separated list" string themeType; "type of theme of interaction, values: complex, gene or family" string themeName; "name of theme, as used in database" lstring themeGenes; "gene symbols of theme, comma-separated list" string relType; "type of relation between cause and theme" string relSubtype; "subtype of relation, if provided" string docId; "document docId, number is a PMID" string sentenceId; "index of sentence in document" string triggerTokenId; "index of trigger token in sentence" string themeTokenStart; "index of token where theme starts in sentence" string themeTokenEnd; "index of token where theme ends in sentence" string causeTokenStart; "index of token where cause starts in sentence" string causeTokenEnd; "index of token where cause ends in sentence" lstring sentence; "full sentence from document" )