3befa37afeed7e94561d5d38cd429744ffe377f3
hiram
  Tue Jun 6 09:56:58 2017 -0700
scripts need to go out with make utils no redmine

diff --git src/hg/utils/makefile src/hg/utils/makefile
index 73a967e..04eacf4 100644
--- src/hg/utils/makefile
+++ src/hg/utils/makefile
@@ -47,30 +47,32 @@
 	pslMapPostChain \
 	tdbQuery \
 	transMapPslToGenePred \
 	twoBitMask
 
 USER_APP_SCRIPTS = \
 	vai.pl
 
 SCRIPT_FILES = \
 	dbNsfpToBed.pl \
 	dumpDb.pl \
 	mergeOverlapBed4.pl \
 	mergeSortedBed3Plus.pl \
 	${USER_APP_SCRIPTS}
 
+APP_SCRIPTS = ${SCRIPT_FILES}
+
 # List of directories to build of interest only at UCSC
 DIRS = ${buildRefresh} \
 	automation \
 	buildReleaseLog \
 	checkUrlsInTable \
 	geoMirrorNode \
 	makeTrackIndex \
 	mysqlSecurityCheck \
 	pslUniq \
 	refSeqGet \
 	safePush \
 	toDev64 \
 	wigBedToStep
 
 TEST_DIRS = \
@@ -78,33 +80,37 @@
 	genePredToProt \
 	gff3ToGenePred \
 	gff3ToPsl \
 	gtfToGenePred \
 	hubCheck \
 	overlapSelect \
 	pslMap \
 	pslToBigPsl \
 	refSeqGet \
 	transMapPslToGenePred
 
 APPS = $(DIRS) $(UTILS_APPLIST)
 
 all:: utils
 
-utils: $(APPS:%=%.utils)
+utils: $(APPS:%=%.utils) $(APP_SCRIPTS:%=%.appScript)
 %.utils:
 	cd $* && echo $* && $(MAKE)
+%.appScript:
+	chmod +x $*
+	rm -f ${DESTDIR}${SCRIPTS}/$*
+	cp -p $* ${DESTDIR}${SCRIPTS}/$*
 
 userApps: $(UTILS_APPLIST:%=%.userApp) $(USER_APP_SCRIPTS:%=%.userAppScript)
 %.userApp:
 	cd $* && echo $* && $(MAKE)
 %.userAppScript:
 	chmod +x $*
 	rm -f ${DESTDIR}${BINDIR}/$*
 	cp -p $* ${DESTDIR}${BINDIR}/$*
 
 scripts: $(SCRIPT_FILES:%=%.scripts)
 %.scripts:
 	chmod +x $*
 	rm -f ${SCRIPTS}/$*
 	cp -p $* ${SCRIPTS}/$*