Commits for angie

v351_preview to v351_preview2 (2017-06-12 to 2017-06-19) v351

e777dc616c08872dfe6cd9fd10b69c5eb81abbd3 Wed Jun 14 09:55:38 2017 -0700

• Adding optLib to libs target so that 'make libs' is sufficient to build CGIs. This does not affect userApps because userApps does not depend on libs.
  • src/makefile - lines changed 4, context: html, text, full: html, text

61917474c6c267cd21f007c1f2d5b5f243ee7d5f Mon Jun 19 09:25:58 2017 -0700

• Prevent unsigned int underflow when sum of blockSizes is greater than actual qSize. Collapse contiguous 'exons' that are split to represent internal frameshift (e.g. ribosomal frameshift) in genePredExt but need to be a single block to avoid pslCheck errors downstream. This prevents a few PSLs from being lost from ncbiRefSeqPsl.
  • src/hg/genePredToFakePsl/genePredToFakePsl.c - lines changed 21, context: html, text, full: html, text