Commits for jnavarr5

v351_base to v352_preview (2017-06-26 to 2017-07-03) v352

cb7ededc6adeb23505b385022cf17fadb3703c9a Mon Jun 26 10:20:12 2017 -0700

• Updating broken references link on the All Gencode super track description page, refs #19256
  • src/hg/makeDb/trackDb/human/hg38/wgEncodeGencodeSuper.html - lines changed 1, context: html, text, full: html, text

2967bde00c588b7485c20278f0cfd13136000a8f Wed Jun 28 10:20:54 2017 -0700

• Making minor edits as per code review, refs #19688
  • src/hg/htdocs/goldenPath/help/hgSessionHelp.html - lines changed 5, context: html, text, full: html, text

b8082d2f989b62f945408762ba0b3afadcc2455f Wed Jun 28 12:37:34 2017 -0700

• Adding a note that this hub is in our Public Hubs to the landing page. Removing unnesessary whitespace for <p> tags. CR #19688
  • src/hg/makeDb/doc/mouseStrains/hubIndex.html - lines changed 9, context: html, text, full: html, text

1fa3b9789f8c31ef5c5c91e481eae47fb9c27971 Wed Jun 28 13:13:57 2017 -0700

• Removing an extra period in the Augustus track description page, hub #13553
  • src/hg/makeDb/doc/mouseStrains/GCA_001624185.1_129S1_SvImJ_v1/html/GCA_001624185.1_129S1_SvImJ_v1.augustus.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/doc/mouseStrains/GCA_001624215.1_A_J_v1/html/GCA_001624215.1_A_J_v1.augustus.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/doc/mouseStrains/GCA_001624295.1_AKR_J_v1/html/GCA_001624295.1_AKR_J_v1.augustus.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/doc/mouseStrains/GCA_001624445.1_CAST_EiJ_v1/html/GCA_001624445.1_CAST_EiJ_v1.augustus.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/doc/mouseStrains/GCA_001624475.1_CBA_J_v1/html/GCA_001624475.1_CBA_J_v1.augustus.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/doc/mouseStrains/GCA_001624505.1_DBA_2J_v1/html/GCA_001624505.1_DBA_2J_v1.augustus.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/doc/mouseStrains/GCA_001624535.1_FVB_NJ_v1/html/GCA_001624535.1_FVB_NJ_v1.augustus.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/doc/mouseStrains/GCA_001624675.1_NOD_ShiLtJ_v1/html/GCA_001624675.1_NOD_ShiLtJ_v1.augustus.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/doc/mouseStrains/GCA_001624745.1_NZO_HlLtJ_v1/html/GCA_001624745.1_NZO_HlLtJ_v1.augustus.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/doc/mouseStrains/GCA_001624775.1_PWK_PhJ_v1/html/GCA_001624775.1_PWK_PhJ_v1.augustus.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/doc/mouseStrains/GCA_001624835.1_WSB_EiJ_v1/html/GCA_001624835.1_WSB_EiJ_v1.augustus.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/doc/mouseStrains/GCA_001632525.1_BALB_cJ_v1/html/GCA_001632525.1_BALB_cJ_v1.augustus.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/doc/mouseStrains/GCA_001632555.1_C57BL_6NJ_v1/html/GCA_001632555.1_C57BL_6NJ_v1.augustus.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/doc/mouseStrains/GCA_001632575.1_C3H_HeJ_v1/html/GCA_001632575.1_C3H_HeJ_v1.augustus.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/doc/mouseStrains/GCA_001632615.1_LP_J_v1/html/GCA_001632615.1_LP_J_v1.augustus.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/doc/mouseStrains/GCA_900094665.1_CAROLI_EIJ_v1/html/GCA_900094665.1_CAROLI_EIJ_v1.augustus.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/doc/mouseStrains/GCA_900095145.1_PAHARI_EIJ_v1/html/GCA_900095145.1_PAHARI_EIJ_v1.augustus.html - lines changed 1, context: html, text, full: html, text

3f5dd306a14ad0e28ec5d3e44bd2ea0be83e1515 Thu Jun 29 10:27:00 2017 -0700

• Hiding the previous All Gencode V24 composite from the super track, refs #19256
  • src/hg/makeDb/trackDb/human/hg38/wgEncodeGencodeV24.ra - lines changed 1, context: html, text, full: html, text

04162b0306c57e6ed7a5ec94889e3f986f137a8f Fri Jun 30 10:16:46 2017 -0700

• Reducing the line length under 100 characters and adding double quotes around attribute values, refs #13553
  • src/hg/makeDb/doc/mouseStrains/hubIndex.html - lines changed 240, context: html, text, full: html, text

11e66778bc841822468245754ae6af8654ec2997 Fri Jun 30 11:28:01 2017 -0700

• Adding links to each strain's genome browser on the landing page, refs #13553
  • src/hg/makeDb/doc/mouseStrains/hubIndex.html - lines changed 48, context: html, text, full: html, text

79d467163716b49fa226d204ba6efae2d1bafcab Fri Jun 30 13:30:02 2017 -0700

• Removing the links to each strain's genome browser since it will cause issues with euro and asia users, refs #13553
  • src/hg/makeDb/doc/mouseStrains/hubIndex.html - lines changed 48, context: html, text, full: html, text

e37f14056b194ed7b48035ab47c7736d1efc1fa2 Fri Jun 30 13:35:14 2017 -0700

• Adding a link to the mouse strain hub landing page, refs #13553
  • src/hg/makeDb/trackDb/mouse/mm10/description.html - lines changed 5, context: html, text, full: html, text

96d8c82bd02527d01aa9b3098fb296502b787453 Fri Jun 30 16:07:21 2017 -0700

• Adding the cactus track description page to the mice strain track, refs #13553
  • src/hg/makeDb/doc/mouseStrains/GCA_001624185.1_129S1_SvImJ_v1/GCA_001624185.1_129S1_SvImJ_v1.bigMaf.trackDb.txt - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/doc/mouseStrains/GCA_001624215.1_A_J_v1/GCA_001624215.1_A_J_v1.bigMaf.trackDb.txt - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/doc/mouseStrains/GCA_001624295.1_AKR_J_v1/GCA_001624295.1_AKR_J_v1.bigMaf.trackDb.txt - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/doc/mouseStrains/GCA_001624445.1_CAST_EiJ_v1/GCA_001624445.1_CAST_EiJ_v1.bigMaf.trackDb.txt - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/doc/mouseStrains/GCA_001624475.1_CBA_J_v1/GCA_001624475.1_CBA_J_v1.bigMaf.trackDb.txt - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/doc/mouseStrains/GCA_001624505.1_DBA_2J_v1/GCA_001624505.1_DBA_2J_v1.bigMaf.trackDb.txt - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/doc/mouseStrains/GCA_001624535.1_FVB_NJ_v1/GCA_001624535.1_FVB_NJ_v1.bigMaf.trackDb.txt - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/doc/mouseStrains/GCA_001624675.1_NOD_ShiLtJ_v1/GCA_001624675.1_NOD_ShiLtJ_v1.bigMaf.trackDb.txt - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/doc/mouseStrains/GCA_001624745.1_NZO_HlLtJ_v1/GCA_001624745.1_NZO_HlLtJ_v1.bigMaf.trackDb.txt - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/doc/mouseStrains/GCA_001624775.1_PWK_PhJ_v1/GCA_001624775.1_PWK_PhJ_v1.bigMaf.trackDb.txt - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/doc/mouseStrains/GCA_001624835.1_WSB_EiJ_v1/GCA_001624835.1_WSB_EiJ_v1.bigMaf.trackDb.txt - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/doc/mouseStrains/GCA_001624865.1_SPRET_EiJ_v1/GCA_001624865.1_SPRET_EiJ_v1.bigMaf.trackDb.txt - lines changed 3, context: html, text, full: html, text
  • src/hg/makeDb/doc/mouseStrains/GCA_001632525.1_BALB_cJ_v1/GCA_001632525.1_BALB_cJ_v1.bigMaf.trackDb.txt - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/doc/mouseStrains/GCA_001632555.1_C57BL_6NJ_v1/GCA_001632555.1_C57BL_6NJ_v1.bigMaf.trackDb.txt - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/doc/mouseStrains/GCA_001632575.1_C3H_HeJ_v1/GCA_001632575.1_C3H_HeJ_v1.bigMaf.trackDb.txt - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/doc/mouseStrains/GCA_001632615.1_LP_J_v1/GCA_001632615.1_LP_J_v1.bigMaf.trackDb.txt - lines changed 1, context: html, text, full: html, text