944d721b951ffdb71e8ce7caf7215ee83fbb1045
kent
  Wed Jun 28 01:35:47 2017 -0700
Removing statement about no input pipe limitation from usage message as it got fixed.

diff --git src/utils/fastqStatsAndSubsample/fastqStatsAndSubsample.c src/utils/fastqStatsAndSubsample/fastqStatsAndSubsample.c
index 4ea30da..5dc5d98 100644
--- src/utils/fastqStatsAndSubsample/fastqStatsAndSubsample.c
+++ src/utils/fastqStatsAndSubsample/fastqStatsAndSubsample.c
@@ -26,31 +26,31 @@
  * Earlier versions of this program estimated the amount to reduce in the first pass
  * and were more efficient, but the estimates were based on the file sizes, and thus
  * sometimes varied when dealing with compressed input files, and this would break the
  * correspondence between read pairs, so now the estimate is always 1/10. */
 
 int sampleSize = 100000;
 int seed = 0;
 boolean smallOk = FALSE;
 
 void usage()
 /* Explain usage and exit. */
 {
 errAbort(
   "fastqStatsAndSubsample v2 - Go through a fastq file doing sanity checks and collecting stats\n"
   "and also producing a smaller fastq out of a sample of the data.  The fastq input may be\n"
-  "compressed with gzip or bzip2.  Unfortunately the fastq input can't be in a pipe\n"
+  "compressed with gzip or bzip2.\n"
   "usage:\n"
   "   fastqStatsAndSubsample in.fastq out.stats out.fastq\n"
   "options:\n"
   "   -sampleSize=N - default %d\n"
   "   -seed=N - Use given seed for random number generator.  Default %d.\n"
   "   -smallOk - Not an error if less than sampleSize reads.  out.fastq will be entire in.fastq\n"
   , sampleSize, seed
   );
 }
 
 /* Command line validation table. */
 static struct optionSpec options[] = {
    {"sampleSize", OPTION_INT},
    {"seed", OPTION_INT},
    {"smallOk", OPTION_BOOLEAN},