22ab420d575d277dffbec127b99dc45f52fee784
max
  Thu Jun 29 10:07:13 2017 -0700
adding gtex hgFixed tables, chrisL figured it all out, I only copied from his suggested code, refs #19587

diff --git src/browserbox/root/updateBrowser.sh src/browserbox/root/updateBrowser.sh
index 32e6a54..01d8766 100755
--- src/browserbox/root/updateBrowser.sh
+++ src/browserbox/root/updateBrowser.sh
@@ -319,30 +319,34 @@
 mkdir -p /data/gbdb/hg38/targetDb/
 mkdir -p /data/gbdb/hg38/html/
 mkdir -p /data/mysql/hg38
 
 # GBDB files
 for i in hg38.2bit html/description.html knownGene.ix knownGene.ixx knownGene.bb targetDb/kgTargetSeq10.2bit targetDb/kgTargetSeq8.2bit targetDb/kgTargetSeq9.2bit trackDb.ix trackDb.ixx; do
    touch /data/gbdb/hg38/$i;
 done
 
 # MySQL tables
 for i in chromInfo cytoBand cytoBandIdeo ensemblLift extFile grp gtexGene gtexGeneModel hgFindSpec kgColor kgXref knownCanonical knownGene knownToTag ncbiRefSeq ncbiRefSeqCurated ncbiRefSeqLink ncbiRefSeqOther ncbiRefSeqPredicted ncbiRefSeqPsl refGene tableList trackDb ucscToEnsembl ucscToINSDC xenoRefGene; do
    touch /data/mysql/hg38/$i.MYD;
    touch /data/mysql/hg38/$i.MYI;
    touch /data/mysql/hg38/$i.frm;
 done
+
+# adding tables that are required for gtex, which is now a default track, #19587
+touch /data/mysql/hgFixed/gtexInfo.{MYI,MYD,frm}
+
 # -- END JUNE 2017
 
 if [ "$1" != "hgwdev" ] ; then
   echo - Updating GBDB files...
   rsync $RSYNCOPTS --existing rsync://hgdownload.cse.ucsc.edu/gbdb/ /data/gbdb/
   chown -R www-data.www-data /data/gbdb/
 fi
 
 echo - Pulling other files
 # make sure we never overwrite the hg.conf.local file
 rsync $RSYNCOPTS $PUSHLOC / --exclude=hg.conf.local
 
 # July 2016: add the cram fetcher to root's crontab 
 # this has to be done after the PUSHLOC directory has been copied over
 if grep -q fetchCramReference /var/spool/cron/crontabs/root; then