Commits for angie
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v353_preview2 to v353_base (2017-07-31 to 2017-08-07) v353
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b9af5d88785ba21a316027a5e22e5fbd5fb9a1af Mon Jul 31 10:34:03 2017 -0700
- Added support for "chr" sequence names in HGVS genomic (g.) terms. refs #19832
3d7162950c4263142f123cfb968f9e7be7dcf2c4 Mon Jul 31 16:29:23 2017 -0700
- Fixing bug found by Cath in #19832 note-3. refs #19832
5ee15559749943e284aed0e62e22e24bbe3523e0 Tue Aug 1 10:11:36 2017 -0700
- findSelectedTrack needs to return the top-level/composite track if it's given a subtrack name, so the returned track can be compared against top-level tracks in fullTrackList. In hg19 refGene is a top-level track, but in hg38 refGene is a subtrack of refSeqComposite so findSelectedTrack needs to return refSeqComposite. refs #19920.
- src/hg/hgTables/hgTables.c - lines changed 3, context: html, text, full: html, text
619353d17795a1211e21aac1b64b4aba8e67bdd1 Wed Aug 2 09:14:15 2017 -0700
- Added missing NULL check to catch failure when changing to a new group. refs #19930, #19920 note-7
- src/hg/hgTablesTest/hgTablesTest.c - lines changed 2, context: html, text, full: html, text
6c19a52350eb826034160d10f751358437bedd93 Wed Aug 2 12:04:54 2017 -0700
- Root names of split table sets, e.g. intronEst for chr*_intronEst, were falling into the !hTableExists check in maybeGetHti and were mistakenly given hti with root name as table name. Instead of assuming that any 'table' that does not exist as a table is bigWig, check for bigWig similarly to the way we check for other bigFile types and create a more accurate hti. refs #19930
- src/hg/hgTables/bigWig.c - lines changed 13, context: html, text, full: html, text
- src/hg/hgTables/hgTables.c - lines changed 4, context: html, text, full: html, text
- src/hg/hgTables/hgTables.h - lines changed 2, context: html, text, full: html, text
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