Genome Browser screen shots: Journal-quality screen shots of the Genome Browser can be produced by using the PDF/PS utility accessed via the View menu in the top navigation bar on the tracks display page. When including a screen shot in your manuscript, reference http://genome.ucsc.edu in the caption and cite the Genome Browser paper in the manuscript. Don't forget to mention the genome assembly used to produce the image. When including a Genome Browser URL, please remove the hgsid parameter. It is an internally-used parameter that expires after about a day.
Annotation data:
-Rosenbloom KR, Armstrong J, Barber GP, Casper J, Clawson H, Diekhans M, Dreszer TR, Fujita PA,
-Guruvadoo L, Haeussler M, Harte RA, Heitner S, Hickey G, Hinrichs AS, Hubley R, Karolchik D,
-Learned K, Lee BT, Li CH, Miga KH, Nguyen N, Paten B, Raney BJ, Smit AF, Speir ML, Zweig AS,
-Haussler D, Kuhn RM, Kent WJ.
- The UCSC Genome Browser database: 2015 update.
-Nucleic Acids Res. 2015 Jan;43(Database issue):D670-81.
-PMID: 25428374;
-PMC: PMC4383971
+Tyner C, Barber GP, Casper J, Clawson H, Diekhans M, Eisenhart C, Fischer CM, Gibson D, Gonzalez JN,
+Guruvadoo L, Haeussler M, Heitner S, Hinrichs AS, Karolchik D, Lee BT, Lee CM, Nejad P, Raney BJ,
+Rosenbloom KR, Speir ML, Villarreal C, Vivian J, Zweig AS, Haussler D, Kuhn RM, Kent WJ.
+
+The UCSC Genome Browser database: 2017 update.
+Nucleic Acids Res. 2017 Jan 4;45(D1):D626-D634.
+PMID: 27899642; PMC: PMC5210591
(Cite this paper for annotation data extracted from the Genome Browser database. Annotation
tracks should also be credited according to their source, which can be found on the track's
description page or on the Genome Browser Credits page.)
ENCODE annotation data: Rosenbloom KR, Sloan CA, Malladi VS, Dreszer TR, Learned K, Kirkup VM, Wong MC, Maddren M, Fang R, Heitner SG, Lee BT, Barber GP, Harte RA, Diekhans M, Long JC, Wilder SP, Zweig AS, Karolchik D, Kuhn RM, Haussler D, Kent WJ. ENCODE data in the UCSC Genome Browser: year 5 update. Nucleic Acids Res. 2013 Jan;41(Database issue):D56-63.
Human genome assembly: