Commits for hiram

v352_base to v353_preview (2017-07-17 to 2017-07-24) v353

118ed185e6dd714a9896cfbc8287ca81d9decfbb Mon Jul 17 23:14:43 2017 -0700

• adding the CFD score calculations refs #18969
  • src/utils/crisprKmers/crisprKmers.c - lines changed 186, context: html, text, full: html, text

6298ec1c37c297189e74a9acc218397be6afc72a Tue Jul 18 10:22:38 2017 -0700

• adding 18-way phylo tree for mouse strains refs #13553
  • src/hg/htdocs/images/phylo/mouseStrains_18way.png - lines changed 0, context: html, text, full: html, text (a binary file or whitespace-only change shows no diff)
  • src/hg/makeDb/doc/mouseStrains/mouseStrains.18way.nh - lines changed 18, context: html, text, full: html, text

d821d48d0f454a343f806d2567929bad4be1a09c Tue Jul 18 13:03:50 2017 -0700

• looks like MIT and CFD scores are functioning correctly now refs #18969
  • src/utils/crisprKmers/crisprKmers.c - lines changed 63, context: html, text, full: html, text

3f6442f9cbf277adf44d00d78a5aaf53e5b0e4c7 Thu Jul 20 12:47:20 2017 -0700

• failed experiment to utilize CPU caching, does not help, just for the record checked in, refs #18969
  • src/utils/crisprKmers/crisprKmers.c - lines changed 160, context: html, text, full: html, text

083833e1f84528f923fde137a041657635f4564e Thu Jul 20 22:29:00 2017 -0700

• remove the CPU cache experiment and change memLimit option to threads refs #18969
  • src/utils/crisprKmers/crisprKmers.c - lines changed 49, context: html, text, full: html, text

b2b1b6303df0a95750126a29c6e96f115f23b674 Fri Jul 21 09:22:45 2017 -0700

• change Ann to Brian in email message no redmine
  • src/utils/qa/weeklybld/summaryEmail.sh - lines changed 1, context: html, text, full: html, text

cf40145885582f6573880bce3f123679f61cb5a1 Fri Jul 21 22:32:58 2017 -0700

• taking a look at the crisprKmer track refs #18969
  • src/hg/makeDb/trackDb/worm/ce10/trackDb.ra - lines changed 33, context: html, text, full: html, text

98a9e74cefbb5946e7e5a14f0efced56eee34e71 Mon Jul 24 09:14:54 2017 -0700

• adding hgFakeAgp to userApps per user request refs #19843
  • src/hg/makeDb/makefile - lines changed 1, context: html, text, full: html, text

a0d80a4f6d675eee8020ac9ed4d613ec40d74d9e Mon Jul 24 09:55:48 2017 -0700

• v353 preview1 refs #19715
  • src/utils/qa/weeklybld/buildEnv.csh - lines changed 2, context: html, text, full: html, text