Commits for kate

v352_base to v353_preview (2017-07-17 to 2017-07-24) v353

357131c4e27b8116f9930bdf600b53403a581556 Mon Jul 17 15:07:22 2017 -0700

• Fix trackUi popup position. Fixes bugs where popup moves around and sometimes disappears after using Apply button. Credit to Joe Thomas for troubleshooting. refs #16948
  • src/hg/js/hgTracks.js - lines changed 6, context: html, text, full: html, text

b339fe079c5ff5ff327d8bca2949ec9cdc446578 Mon Jul 17 15:07:46 2017 -0700

• Merge branch 'apply-bug'

188c181cec969cc105bf72c9138360ea5c4f78c3 Mon Jul 17 15:35:19 2017 -0700

• Set default probability to .5, by request of JK (observing many single-tissue items, indicative of noise). refs #15646
  • src/hg/lib/gtexUi.c - lines changed 1, context: html, text, full: html, text

07d69821a29e5862d56812e2cb3bc10bf9d903f7 Mon Jul 17 15:37:50 2017 -0700

• Set default probability to .5, by request of JK (observing many single-tissue items, indicative of noise). refs #15646
  • src/hg/inc/gtexUi.h - lines changed 1, context: html, text, full: html, text

4e04099939e8c5351d07cd086a3a5140cb678532 Mon Jul 17 16:36:35 2017 -0700

• 1. Print MAF (instead of allele freqs). Code cleanup. refs #15646
  • src/hg/hgc/gtexEqtlClusterClick.c - lines changed 133, context: html, text, full: html, text

89065c3677b833bb80467057e0d54c367ea9600a Tue Jul 18 15:38:41 2017 -0700

• Set item color for GTEx eqtl tissue tracks to black. O/w there's too much color going on!
  • src/hg/hgTracks/simpleTracks.c - lines changed 8, context: html, text, full: html, text

649c42550d482f3264b55265e9d3b1a0c7c92c94 Tue Jul 18 15:39:25 2017 -0700

• Switch some settings and move to expression group, as per JK
  • src/hg/makeDb/trackDb/human/hg19/gtexEqtl.ra - lines changed 51, context: html, text, full: html, text

9fc0c821c4290aec70704ec473fa79bb9afd0319 Tue Jul 18 15:40:09 2017 -0700

• Switch some settings and move to expression group, as per JK
  • src/hg/makeDb/trackDb/human/hg19/trackDb.ra - lines changed 3, context: html, text, full: html, text

321309e057df857daf2b00099ded02864dc77d2f Tue Jul 18 16:06:20 2017 -0700

• 1. Fix problem in full mode. 2. Make tissue track item labels black (too many colors o/w). refs #15646
  • src/hg/hgTracks/gtexEqtlClusterTrack.c - lines changed 1, context: html, text, full: html, text
  • src/hg/hgTracks/gtexTracks.c - lines changed 6, context: html, text, full: html, text
  • src/hg/hgTracks/hgTracks.h - lines changed 6, context: html, text, full: html, text

dd1c233b61b1877907f465a80a7bfb1c6677a70a Tue Jul 18 16:08:16 2017 -0700

• Add GTEx eQTL Tissues composite track. refs #15646
  • src/hg/makeDb/trackDb/human/hg19/gtexEqtl.ra - lines changed 415, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/trackDb.ra - lines changed 1, context: html, text, full: html, text