Commits for angie

v354_preview2 to v354_base (2017-08-18 to 2017-08-28) v354

4403e216c46d2f99eabd1f05e0e3c3531600b6ef Fri Aug 18 16:23:10 2017 -0700

• Remind the user which assembly is selected when we can't find a search term.
  • src/hg/lib/cartJson.c - lines changed 2, context: html, text, full: html, text
  • src/hg/lib/hgFind.c - lines changed 2, context: html, text, full: html, text

19c412b4ecb9bcc6c1816a0767be9666babe7e70 Fri Aug 25 10:14:50 2017 -0700

• Temporarily commenting out a test case due to ncbiRefSeqPsl being slightly different on hgwdev vs hgwbeta.
  • src/hg/lib/tests/expected/hgvs/clinVarHgvs.txt - lines changed 4, context: html, text, full: html, text
  • src/hg/lib/tests/input/hgvs/clinVarHgvs.txt - lines changed 4, context: html, text, full: html, text

237797ddf3c409a500449847bbdea1c47776ae44 Fri Aug 25 13:50:48 2017 -0700

• Count hashNumEntries only once instead of every time hRefSeqAccForChrom is called.
  • src/hg/lib/hdb.c - lines changed 4, context: html, text, full: html, text

0ab5ce741156d73ef707d3db81d10007cc12589d Fri Aug 25 17:06:14 2017 -0700

• hgVai needs to make its own hgvsG terms for regulatory variants since they're not associated with a transcript. Thanks ChrisL for noticing they were missing! refs #19968
  • src/hg/hgVai/hgVai.c - lines changed 5, context: html, text, full: html, text
  • src/hg/inc/annoFormatVep.h - lines changed 3, context: html, text, full: html, text
  • src/hg/lib/annoFormatVep.c - lines changed 43, context: html, text, full: html, text