8661e8f2fc9a3dd45c75a4efe96c2cfa8676c958
ceisenhart
  Fri Aug 25 11:50:08 2017 -0700
Documentation for the COSMIC track update, refs #19932

diff --git src/hg/lib/cosmicNew.as src/hg/lib/cosmicNew.as
index 51ce0b4..a7b3325 100644
--- src/hg/lib/cosmicNew.as
+++ src/hg/lib/cosmicNew.as
@@ -1,23 +1,26 @@
 table cosmicNew
 "Bed representation of the Catalog of Somatic Mutations in Cancer (COSMIC)"
     (
     string chrom;          "Reference sequence chromosome or scaffold"
     uint   chromStart;     "Start position in chromosome"
     uint   chromEnd;       "End position in chromosome"
     string name;           "COSMIC mutation ID"
+	uint score;            "Unused. A score between 0 and 1000"    
    	char[1] strand;        "+ or - for strand. Use . if not applicable"
+    uint   thickStart;     "Start position in chromosome"
+    uint   thickEnd;       "End position in chromosome"
 	string geneName;       "Gene: HUGO symbol, mir-* ID, etc" 
     string transcriptAcc;  "ENST, NM_, XM_ or other transcript accession"
     int geneCdsLength;     "Length of the gene (base pair) counts"
     int geneId;            "If gene is in HGNC, this id helps linking it to HGNC"
     string sampleName;     "A sample is an instance of a portion of a tumour being examined for mutations"
     int sampleId;          "A sample id is used to identify a sample within the COSMIC database"
     int idTumor;           "A number of samples can be taken from a single tumour and a number of tumours can be obtained from one individual"
     string primSite;       "Primary site of organ or tissue from which tumor sample was taken"
     string siteSubtype1;   "Subtype 1 site of organ or tissue from which tumor sample was taken"
     string siteSubtype2;   "Subtype 2 site of organ or tissue from which tumor sample was taken"
     string siteSubtype3;   "Subtype 3 site of organ or tissue from which tumor sample was taken"
     string primHistology;  "Primary histology of organ or tissue from which tumor sample was taken"
     string histSubtype1;   "Subtype 1 histology of organ or tissue from which tumor sample was taken"
     string histSubtype2;   "Subtype 2 histology of organ or tissue from which tumor sample was taken"
     string histSubtype3;   "Subtype 3 histology of organ or tissue from which tumor sample was taken"